Strain Fitness in Pseudomonas putida KT2440 around PP_1781

Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
1,992,764	+		PP_1780	0.83	-0.1
1,992,765	-		PP_1780	0.83	+1.0
1,992,797	+		PP_1780	0.84	+0.5
1,992,797	+		PP_1780	0.84	-0.2
1,992,798	-		PP_1780	0.84	+0.9
1,992,807	+		PP_1780	0.84	-0.7
1,992,807	+		PP_1780	0.84	+1.3
1,992,808	-		PP_1780	0.84	+1.3
1,992,808	-		PP_1780	0.84	+1.2
1,992,855	-		PP_1780	0.85	+0.3
1,992,855	-		PP_1780	0.85	-0.1
1,992,956	+		PP_1780	0.87	-1.9
1,992,957	-		PP_1780	0.87	+4.8
1,992,968	+		PP_1780	0.88	+1.4
1,992,969	-		PP_1780	0.88	+0.9
1,993,007	+		PP_1780	0.88	+0.0
1,993,008	-		PP_1780	0.88	-1.5
1,993,017	-		PP_1780	0.89	+0.4
1,993,085	-				-0.1
1,993,221	+				+0.6
1,993,221	+				-0.3
1,993,222	-				+1.1
1,993,222	-				+1.4
1,993,273	+				+0.7
1,993,274	-				+0.7
1,993,343	-				+2.2
1,993,359	+				+3.5
1,993,362	+				+0.1
1,993,362	+				-0.4
1,993,363	-				+1.3
1,993,363	-				+0.3
1,993,363	-				+0.1
1,993,363	-				+1.1
1,993,363	-				-0.9
1,993,390	+				-0.0
1,993,390	+				+0.1
1,993,390	+				+1.7
1,993,390	+				+0.1
1,993,390	+				-0.1
1,993,391	-				+1.3
1,993,391	-				+0.4
1,993,466	-				+0.3
1,993,523	+				-1.5
1,993,524	-				+0.1
1,993,539	-				-0.3
1,993,539	-				-0.3
1,993,539	-				-0.1
1,993,539	-				+2.0
1,993,568	+				+1.8
1,993,629	-				-0.3
1,993,637	+				-0.5
1,993,637	+				+0.7
1,993,638	-				-0.5
1,993,638	-				+0.6
1,993,638	-				+0.4
1,993,651	+				+3.4
1,993,662	-				+0.2
1,993,700	+				+5.7
1,993,700	+				-0.4
1,993,744	+				+0.1
1,993,790	+		PP_1781	0.12	-0.3
1,993,791	-		PP_1781	0.12	-0.2
1,993,800	+		PP_1781	0.13	-0.6
1,993,801	-		PP_1781	0.13	+0.0
1,993,801	-		PP_1781	0.13	+3.9
1,993,801	-		PP_1781	0.13	+6.6
1,993,801	-		PP_1781	0.13	+2.0
1,993,801	-		PP_1781	0.13	+7.5
1,993,865	+		PP_1781	0.19	+3.6
1,993,865	+		PP_1781	0.19	+0.2
1,993,866	-		PP_1781	0.19	+0.3
1,993,874	+		PP_1781	0.20	+0.8
1,993,874	+		PP_1781	0.20	+6.0
1,993,874	+		PP_1781	0.20	+5.1
1,993,874	+		PP_1781	0.20	+0.3
1,993,874	+		PP_1781	0.20	+4.2
1,993,874	+		PP_1781	0.20	+6.0
1,993,874	+		PP_1781	0.20	+6.0
1,993,875	-		PP_1781	0.20	+0.5
1,993,875	-		PP_1781	0.20	+0.3
1,993,951	+		PP_1781	0.27	+0.1
1,993,952	-		PP_1781	0.27	+0.7
1,993,954	+		PP_1781	0.27	+0.9
1,993,970	+		PP_1781	0.28	-0.9
1,993,970	+		PP_1781	0.28	-0.7
1,993,970	+		PP_1781	0.28	+0.7
1,993,970	+		PP_1781	0.28	+0.7
1,993,970	+		PP_1781	0.28	+0.7
1,993,970	+		PP_1781	0.28	+1.2
1,993,971	-		PP_1781	0.29	-0.5
1,993,971	-		PP_1781	0.29	+2.4
1,993,971	-		PP_1781	0.29	+4.0
1,993,971	-		PP_1781	0.29	+4.8
1,993,984	-		PP_1781	0.30	+0.8
1,994,031	+		PP_1781	0.34	+0.5
1,994,031	+		PP_1781	0.34	+0.1
1,994,032	-		PP_1781	0.34	+2.4
1,994,084	-		PP_1781	0.39	+0.3
1,994,084	-		PP_1781	0.39	+0.5
1,994,084	-		PP_1781	0.39	+4.5
1,994,101	-		PP_1781	0.40	-0.7
1,994,101	-		PP_1781	0.40	+1.4
1,994,101	-		PP_1781	0.40	+0.7
1,994,102	+		PP_1781	0.41	+0.7
1,994,102	+		PP_1781	0.41	+0.5
1,994,103	-		PP_1781	0.41	-2.0
1,994,103	-		PP_1781	0.41	-0.0
1,994,103	-		PP_1781	0.41	+0.1
1,994,103	-				+7.1
1,994,103	-		PP_1781	0.41	+1.0
1,994,103	-		PP_1781	0.41	+0.7
1,994,103	-		PP_1781	0.41	-0.9
1,994,150	+		PP_1781	0.45	+1.8
1,994,150	+				+0.3
1,994,150	+		PP_1781	0.45	+7.8
1,994,151	-		PP_1781	0.45	+1.7
1,994,151	-		PP_1781	0.45	+0.7
1,994,168	+		PP_1781	0.47	+0.2
1,994,168	+		PP_1781	0.47	+2.7
1,994,168	+		PP_1781	0.47	+0.2
1,994,169	-		PP_1781	0.47	+0.1
1,994,169	-		PP_1781	0.47	+6.3
1,994,246	+		PP_1781	0.54	-1.1
1,994,246	+		PP_1781	0.54	+0.7
1,994,246	+				+3.3
1,994,246	+		PP_1781	0.54	+2.0
1,994,246	+		PP_1781	0.54	-0.8
1,994,247	-		PP_1781	0.54	+2.8
1,994,254	+		PP_1781	0.55	+0.4
1,994,254	+		PP_1781	0.55	+1.0
1,994,254	+		PP_1781	0.55	+3.6
1,994,254	+		PP_1781	0.55	+0.9
1,994,255	-		PP_1781	0.55	+1.7
1,994,255	-		PP_1781	0.55	+1.3
1,994,255	-		PP_1781	0.55	-1.3
1,994,321	-		PP_1781	0.61	-1.4
1,994,348	+		PP_1781	0.63	+2.5
1,994,348	+		PP_1781	0.63	-0.7
1,994,367	-		PP_1781	0.65	+3.5
1,994,375	+		PP_1781	0.66	+0.6
1,994,375	+		PP_1781	0.66	-0.2
1,994,396	+		PP_1781	0.68	-0.4
1,994,396	+		PP_1781	0.68	+0.1
1,994,397	-		PP_1781	0.68	-1.7
1,994,425	-		PP_1781	0.70	+8.9
1,994,431	-		PP_1781	0.71	-0.2
1,994,431	-		PP_1781	0.71	+1.8
1,994,431	-		PP_1781	0.71	-0.1
1,994,440	+		PP_1781	0.72	+0.1
1,994,447	+		PP_1781	0.72	+0.4
1,994,449	+		PP_1781	0.72	+0.1
1,994,449	+		PP_1781	0.72	-0.5
1,994,449	+		PP_1781	0.72	+0.1
1,994,449	+		PP_1781	0.72	+0.8
1,994,450	-		PP_1781	0.73	-0.5
1,994,526	-		PP_1781	0.80	+1.5
1,994,526	-		PP_1781	0.80	+0.9
1,994,547	+		PP_1781	0.81	+1.3
1,994,547	+		PP_1781	0.81	+0.2
1,994,547	+		PP_1781	0.81	+0.4
1,994,548	-		PP_1781	0.82	+0.6
1,994,582	+		PP_1781	0.85	+0.1
1,994,582	+		PP_1781	0.85	+1.4
1,994,583	-		PP_1781	0.85	+0.1
1,994,583	-		PP_1781	0.85	+0.9
1,994,583	-		PP_1781	0.85	+1.4
1,994,583	-		PP_1781	0.85	+0.9
1,994,641	-				-0.8
1,994,641	-				+1.7
1,994,652	-				-0.6
1,994,652	-				+4.3
1,994,720	+				+4.5
1,994,720	+				+0.7
1,994,721	-				-0.0
1,994,721	-				-0.3
1,994,736	+				+0.8
1,994,836	+				-0.2
1,994,836	+				+7.0
1,994,836	+				+3.0
1,994,836	+				-0.4
1,994,837	-				-0.8
1,994,837	-				-0.2
1,994,837	-				+0.4
1,994,837	-				-0.4
1,994,971	+				+1.0
1,994,997	+				+0.1
1,994,997	+				+3.7
1,995,036	+				-0.1
1,995,036	+				-1.9
1,995,037	-				-0.3
1,995,037	-				-0.4
1,995,202	-				-2.0
1,995,202	-				-0.7
1,995,202	-				+1.3
1,995,215	+				-2.1
1,995,216	-				+1.3
1,995,346	-				-1.3
1,995,373	+				-0.0
1,995,408	+				-0.1
1,995,408	+				-0.9
1,995,409	-				-1.0
1,995,409	-				+0.1
1,995,409	-				+0.2
1,995,409	-				+2.0
1,995,409	-				+0.2
1,995,412	+				+0.7
1,995,412	+				+0.5
1,995,412	+				+0.4
1,995,412	+				-0.5
1,995,413	-				-0.2
1,995,413	-				-0.5
1,995,413	-				+1.7
1,995,413	-				+0.3
1,995,413	-				+0.6
1,995,462	+				+1.0
1,995,462	+				-0.1
1,995,462	+				+0.8
1,995,462	+				-1.2
1,995,462	+				-0.1
1,995,462	+				-0.2
1,995,462	+				-1.5
1,995,463	-				+0.1
1,995,463	-				-0.1
1,995,463	-				+0.4
1,995,463	-				-0.5
1,995,543	-				+1.3
1,995,568	+				+0.6
1,995,568	+				-0.4
1,995,568	+				+0.1
1,995,608	+				-1.3
1,995,623	+				+0.4
1,995,623	+				+0.5
1,995,623	+				+0.6
1,995,623	+				-0.9
1,995,623	+				+0.1
1,995,623	+				-0.6
1,995,624	-				+0.7
1,995,624	-				-0.8
1,995,624	-				+0.5
1,995,684	+				-0.8
1,995,684	+				+0.1
1,995,685	-				+0.1
1,995,685	-				+0.3
1,995,685	-				+0.6
1,995,742	+				+0.0
1,995,742	+				-0.7