Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5018 and PP_5019 overlap by 4 nucleotides PP_5019 and PP_5020 are separated by 101 nucleotides PP_5020 and PP_5021 are separated by 257 nucleotides
PP_5018: PP_5018 - sec-independent protein translocase protein, at 5,715,708 to 5,716,496
_5018
PP_5019: PP_5019 - Ribosomal RNA small subunit methyltransferase E, at 5,716,493 to 5,717,200
_5019
PP_5020: PP_5020 - putative methyl-accepting chemotaxis protein, at 5,717,302 to 5,719,218
_5020
PP_5021: PP_5021 - Methyl-accepting chemotaxis transducer, at 5,719,476 to 5,721,419
_5021
Position (kb) 5717
5718
5719
5720 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5716.821 kb on - strand, within PP_5019 at 5717.263 kb on + strand at 5717.263 kb on + strand at 5717.263 kb on + strand at 5717.264 kb on - strand at 5717.264 kb on - strand at 5717.269 kb on + strand at 5717.269 kb on + strand at 5717.270 kb on - strand at 5717.305 kb on + strand at 5717.305 kb on + strand at 5717.305 kb on + strand at 5717.305 kb on + strand at 5717.306 kb on - strand at 5717.306 kb on - strand at 5717.306 kb on - strand at 5717.397 kb on + strand at 5717.476 kb on + strand at 5717.476 kb on + strand at 5717.476 kb on + strand at 5717.476 kb on + strand at 5717.477 kb on - strand at 5717.477 kb on - strand at 5717.477 kb on - strand at 5717.509 kb on + strand, within PP_5020 at 5717.509 kb on + strand, within PP_5020 at 5717.510 kb on - strand, within PP_5020 at 5717.510 kb on - strand, within PP_5020 at 5717.510 kb on - strand, within PP_5020 at 5717.510 kb on - strand, within PP_5020 at 5717.657 kb on - strand, within PP_5020 at 5717.717 kb on + strand, within PP_5020 at 5717.769 kb on + strand, within PP_5020 at 5717.860 kb on + strand, within PP_5020 at 5717.866 kb on + strand, within PP_5020 at 5717.866 kb on + strand, within PP_5020 at 5717.866 kb on + strand, within PP_5020 at 5717.866 kb on + strand, within PP_5020 at 5717.867 kb on - strand, within PP_5020 at 5718.222 kb on + strand, within PP_5020 at 5718.308 kb on + strand, within PP_5020 at 5718.722 kb on + strand, within PP_5020 at 5718.723 kb on - strand, within PP_5020 at 5718.960 kb on - strand, within PP_5020 at 5719.227 kb on - strand at 5719.343 kb on + strand at 5719.343 kb on + strand at 5719.343 kb on + strand at 5719.343 kb on + strand at 5719.344 kb on - strand at 5719.344 kb on - strand at 5719.344 kb on - strand at 5719.344 kb on - strand at 5719.345 kb on + strand at 5719.346 kb on - strand at 5719.381 kb on - strand at 5719.381 kb on - strand at 5719.395 kb on + strand at 5719.396 kb on - strand at 5719.633 kb on + strand at 5719.633 kb on + strand at 5719.633 kb on + strand at 5719.634 kb on - strand at 5719.634 kb on - strand at 5719.634 kb on - strand at 5719.822 kb on + strand, within PP_5021 at 5719.822 kb on + strand, within PP_5021 at 5719.823 kb on - strand, within PP_5021 at 5719.877 kb on - strand, within PP_5021 at 5720.055 kb on + strand, within PP_5021 at 5720.096 kb on + strand, within PP_5021 at 5720.121 kb on - strand, within PP_5021 at 5720.121 kb on - strand, within PP_5021
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,716,821 - PP_5019 0.46 +0.5 5,717,263 + -0.1 5,717,263 + +0.5 5,717,263 + -0.7 5,717,264 - -1.0 5,717,264 - -0.2 5,717,269 + +0.3 5,717,269 + +0.6 5,717,270 - -1.0 5,717,305 + -0.2 5,717,305 + +0.4 5,717,305 + -1.6 5,717,305 + -0.8 5,717,306 - -2.0 5,717,306 - -0.3 5,717,306 - -0.2 5,717,397 + -0.7 5,717,476 + +0.3 5,717,476 + +3.0 5,717,476 + +1.0 5,717,476 + -1.2 5,717,477 - +0.2 5,717,477 - -2.2 5,717,477 - +1.4 5,717,509 + PP_5020 0.11 +3.7 5,717,509 + PP_5020 0.11 +1.0 5,717,510 - PP_5020 0.11 +0.4 5,717,510 - PP_5020 0.11 -2.0 5,717,510 - PP_5020 0.11 -1.1 5,717,510 - PP_5020 0.11 +0.0 5,717,657 - PP_5020 0.19 +1.0 5,717,717 + PP_5020 0.22 +1.0 5,717,769 + PP_5020 0.24 -0.1 5,717,860 + PP_5020 0.29 +2.7 5,717,866 + PP_5020 0.29 -0.8 5,717,866 + PP_5020 0.29 +0.8 5,717,866 + PP_5020 0.29 +1.1 5,717,866 + PP_5020 0.29 +0.8 5,717,867 - PP_5020 0.29 -1.5 5,718,222 + PP_5020 0.48 +5.0 5,718,308 + PP_5020 0.52 -0.5 5,718,722 + PP_5020 0.74 +0.7 5,718,723 - PP_5020 0.74 +1.7 5,718,960 - PP_5020 0.86 -0.6 5,719,227 - +0.5 5,719,343 + +0.0 5,719,343 + -0.6 5,719,343 + +1.1 5,719,343 + -0.3 5,719,344 - -1.0 5,719,344 - +3.8 5,719,344 - +0.9 5,719,344 - +1.3 5,719,345 + +0.1 5,719,346 - -0.1 5,719,381 - -0.4 5,719,381 - +0.7 5,719,395 + +0.6 5,719,396 - +0.6 5,719,633 + -1.3 5,719,633 + -0.6 5,719,633 + +1.0 5,719,634 - -0.0 5,719,634 - +1.2 5,719,634 - +0.8 5,719,822 + PP_5021 0.18 +0.5 5,719,822 + PP_5021 0.18 -1.1 5,719,823 - PP_5021 0.18 +0.0 5,719,877 - PP_5021 0.21 +3.4 5,720,055 + PP_5021 0.30 -1.9 5,720,096 + PP_5021 0.32 -0.6 5,720,121 - PP_5021 0.33 +1.7 5,720,121 - PP_5021 0.33 -0.3
Or see this region's nucleotide sequence