Strain Fitness in Pseudomonas putida KT2440 around PP_4679

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4678 and PP_4679 are separated by 56 nucleotidesPP_4679 and PP_4680 are separated by 1 nucleotides PP_4678: PP_4678 - Ketol-acid reductoisomerase, at 5,316,083 to 5,317,099 _4678 PP_4679: PP_4679 - acetohydroxybutanoate synthase / acetolactate synthase, at 5,317,156 to 5,317,647 _4679 PP_4680: PP_4680 - acetohydroxybutanoate synthase / acetolactate synthase, at 5,317,649 to 5,319,373 _4680 Position (kb) 5317 5318Strain fitness (log2 ratio) -3 -2 -1 0 1at 5316.208 kb on - strand, within PP_4678at 5316.214 kb on + strand, within PP_4678at 5316.215 kb on - strand, within PP_4678at 5316.215 kb on - strand, within PP_4678at 5316.215 kb on - strand, within PP_4678at 5316.215 kb on - strand, within PP_4678at 5316.324 kb on + strand, within PP_4678at 5316.324 kb on + strand, within PP_4678at 5316.324 kb on + strand, within PP_4678at 5316.334 kb on - strand, within PP_4678at 5316.357 kb on + strand, within PP_4678at 5316.357 kb on + strand, within PP_4678at 5316.384 kb on + strand, within PP_4678at 5316.384 kb on + strand, within PP_4678at 5316.384 kb on + strand, within PP_4678at 5316.384 kb on + strand, within PP_4678at 5316.385 kb on - strand, within PP_4678at 5316.385 kb on - strand, within PP_4678at 5316.385 kb on - strand, within PP_4678at 5316.385 kb on - strand, within PP_4678at 5316.395 kb on + strand, within PP_4678at 5316.395 kb on + strand, within PP_4678at 5316.395 kb on + strand, within PP_4678at 5316.396 kb on - strand, within PP_4678at 5316.396 kb on - strand, within PP_4678at 5316.396 kb on - strand, within PP_4678at 5316.429 kb on + strand, within PP_4678at 5316.568 kb on + strand, within PP_4678at 5316.587 kb on + strand, within PP_4678at 5316.587 kb on + strand, within PP_4678at 5316.588 kb on - strand, within PP_4678at 5316.588 kb on - strand, within PP_4678at 5316.600 kb on + strand, within PP_4678at 5316.600 kb on + strand, within PP_4678at 5316.601 kb on - strand, within PP_4678at 5316.642 kb on + strand, within PP_4678at 5316.642 kb on + strand, within PP_4678at 5316.643 kb on - strand, within PP_4678at 5316.643 kb on - strand, within PP_4678at 5316.643 kb on - strand, within PP_4678at 5316.643 kb on - strand, within PP_4678at 5316.646 kb on + strand, within PP_4678at 5316.646 kb on + strand, within PP_4678at 5316.646 kb on + strand, within PP_4678at 5316.762 kb on + strand, within PP_4678at 5316.762 kb on + strand, within PP_4678at 5316.762 kb on + strand, within PP_4678at 5316.834 kb on + strand, within PP_4678at 5316.834 kb on + strand, within PP_4678at 5316.834 kb on + strand, within PP_4678at 5316.835 kb on - strand, within PP_4678at 5316.835 kb on - strand, within PP_4678at 5316.899 kb on - strand, within PP_4678at 5316.958 kb on + strand, within PP_4678at 5316.959 kb on - strand, within PP_4678at 5316.959 kb on - strand, within PP_4678at 5316.959 kb on - strand, within PP_4678at 5316.980 kb on + strand, within PP_4678at 5316.980 kb on + strand, within PP_4678at 5317.051 kb on + strandat 5317.052 kb on - strandat 5317.082 kb on - strandat 5317.115 kb on + strandat 5317.116 kb on - strandat 5317.117 kb on + strandat 5317.117 kb on + strandat 5317.117 kb on + strandat 5317.289 kb on + strand, within PP_4679at 5317.289 kb on + strand, within PP_4679at 5317.290 kb on - strand, within PP_4679at 5317.290 kb on - strand, within PP_4679at 5317.329 kb on + strand, within PP_4679at 5317.330 kb on - strand, within PP_4679at 5317.330 kb on - strand, within PP_4679at 5317.544 kb on - strand, within PP_4679at 5317.565 kb on + strand, within PP_4679at 5317.565 kb on + strand, within PP_4679at 5317.565 kb on + strand, within PP_4679at 5317.566 kb on - strand, within PP_4679at 5317.566 kb on - strand, within PP_4679at 5317.566 kb on - strand, within PP_4679at 5317.566 kb on - strand, within PP_4679at 5317.566 kb on - strand, within PP_4679at 5317.654 kb on + strandat 5317.654 kb on + strandat 5317.654 kb on + strandat 5317.654 kb on + strandat 5317.654 kb on + strandat 5317.713 kb on + strandat 5317.836 kb on + strand, within PP_4680at 5317.836 kb on + strand, within PP_4680at 5317.836 kb on + strand, within PP_4680at 5317.836 kb on + strand, within PP_4680at 5317.836 kb on + strand, within PP_4680at 5317.837 kb on - strand, within PP_4680at 5317.837 kb on - strand, within PP_4680at 5317.837 kb on - strand, within PP_4680at 5317.855 kb on + strand, within PP_4680at 5317.856 kb on - strand, within PP_4680at 5317.878 kb on + strand, within PP_4680at 5317.878 kb on + strand, within PP_4680at 5317.879 kb on - strand, within PP_4680at 5317.879 kb on - strand, within PP_4680at 5317.902 kb on + strand, within PP_4680at 5317.902 kb on + strand, within PP_4680at 5317.903 kb on - strand, within PP_4680at 5317.903 kb on - strand, within PP_4680at 5317.977 kb on + strand, within PP_4680at 5318.151 kb on + strand, within PP_4680at 5318.152 kb on - strand, within PP_4680at 5318.154 kb on + strand, within PP_4680at 5318.155 kb on - strand, within PP_4680at 5318.155 kb on - strand, within PP_4680at 5318.583 kb on + strand, within PP_4680at 5318.584 kb on - strand, within PP_4680at 5318.584 kb on - strand, within PP_4680at 5318.584 kb on - strand, within PP_4680

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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5,316,208 - PP_4678 0.12 -2.0
5,316,214 + PP_4678 0.13 +0.7
5,316,215 - PP_4678 0.13 -2.4
5,316,215 - PP_4678 0.13 -1.5
5,316,215 - PP_4678 0.13 -2.8
5,316,215 - PP_4678 0.13 -2.6
5,316,324 + PP_4678 0.24 -1.4
5,316,324 + PP_4678 0.24 -1.9
5,316,324 + PP_4678 0.24 -0.9
5,316,334 - PP_4678 0.25 -1.3
5,316,357 + PP_4678 0.27 -1.0
5,316,357 + PP_4678 0.27 -2.6
5,316,384 + PP_4678 0.30 -1.5
5,316,384 + PP_4678 0.30 -2.6
5,316,384 + PP_4678 0.30 -2.3
5,316,384 + PP_4678 0.30 -3.1
5,316,385 - PP_4678 0.30 -2.5
5,316,385 - PP_4678 0.30 -3.0
5,316,385 - PP_4678 0.30 -1.6
5,316,385 - PP_4678 0.30 -1.8
5,316,395 + PP_4678 0.31 -3.2
5,316,395 + PP_4678 0.31 -1.0
5,316,395 + PP_4678 0.31 -3.1
5,316,396 - PP_4678 0.31 -2.7
5,316,396 - PP_4678 0.31 -2.1
5,316,396 - PP_4678 0.31 -0.8
5,316,429 + PP_4678 0.34 -2.3
5,316,568 + PP_4678 0.48 -1.5
5,316,587 + PP_4678 0.50 -2.3
5,316,587 + PP_4678 0.50 -2.8
5,316,588 - PP_4678 0.50 -3.0
5,316,588 - PP_4678 0.50 -0.1
5,316,600 + PP_4678 0.51 -0.1
5,316,600 + PP_4678 0.51 -2.6
5,316,601 - PP_4678 0.51 -3.2
5,316,642 + PP_4678 0.55 -0.1
5,316,642 + PP_4678 0.55 +1.0
5,316,643 - PP_4678 0.55 -1.5
5,316,643 - PP_4678 0.55 -0.6
5,316,643 - PP_4678 0.55 -2.6
5,316,643 - PP_4678 0.55 -2.3
5,316,646 + PP_4678 0.55 -0.3
5,316,646 + PP_4678 0.55 -3.0
5,316,646 + PP_4678 0.55 -1.3
5,316,762 + PP_4678 0.67 -0.9
5,316,762 + PP_4678 0.67 -2.1
5,316,762 + PP_4678 0.67 -1.6
5,316,834 + PP_4678 0.74 -2.4
5,316,834 + PP_4678 0.74 -3.4
5,316,834 + PP_4678 0.74 -1.5
5,316,835 - PP_4678 0.74 -1.2
5,316,835 - PP_4678 0.74 -2.1
5,316,899 - PP_4678 0.80 -2.2
5,316,958 + PP_4678 0.86 -2.6
5,316,959 - PP_4678 0.86 -0.8
5,316,959 - PP_4678 0.86 -2.6
5,316,959 - PP_4678 0.86 -1.6
5,316,980 + PP_4678 0.88 -1.1
5,316,980 + PP_4678 0.88 -2.0
5,317,051 + -1.5
5,317,052 - -2.0
5,317,082 - -2.8
5,317,115 + -2.1
5,317,116 - +1.4
5,317,117 + -1.2
5,317,117 + -1.6
5,317,117 + +0.4
5,317,289 + PP_4679 0.27 -0.0
5,317,289 + PP_4679 0.27 -0.6
5,317,290 - PP_4679 0.27 -1.1
5,317,290 - PP_4679 0.27 -1.7
5,317,329 + PP_4679 0.35 -2.7
5,317,330 - PP_4679 0.35 -2.5
5,317,330 - PP_4679 0.35 +0.7
5,317,544 - PP_4679 0.79 -2.0
5,317,565 + PP_4679 0.83 -1.2
5,317,565 + PP_4679 0.83 -1.2
5,317,565 + PP_4679 0.83 -1.5
5,317,566 - PP_4679 0.83 -2.5
5,317,566 - PP_4679 0.83 -0.3
5,317,566 - PP_4679 0.83 -1.1
5,317,566 - PP_4679 0.83 -1.8
5,317,566 - PP_4679 0.83 +0.7
5,317,654 + -2.6
5,317,654 + -3.0
5,317,654 + -3.1
5,317,654 + -2.6
5,317,654 + -2.3
5,317,713 + -3.0
5,317,836 + PP_4680 0.11 -1.6
5,317,836 + PP_4680 0.11 +0.7
5,317,836 + PP_4680 0.11 +1.0
5,317,836 + PP_4680 0.11 -2.5
5,317,836 + PP_4680 0.11 -2.8
5,317,837 - PP_4680 0.11 -1.2
5,317,837 - PP_4680 0.11 -2.5
5,317,837 - PP_4680 0.11 -1.6
5,317,855 + PP_4680 0.12 -3.2
5,317,856 - PP_4680 0.12 -1.8
5,317,878 + PP_4680 0.13 -0.9
5,317,878 + PP_4680 0.13 +1.1
5,317,879 - PP_4680 0.13 -1.8
5,317,879 - PP_4680 0.13 +0.1
5,317,902 + PP_4680 0.15 -1.8
5,317,902 + PP_4680 0.15 -1.1
5,317,903 - PP_4680 0.15 -0.9
5,317,903 - PP_4680 0.15 -1.4
5,317,977 + PP_4680 0.19 -1.9
5,318,151 + PP_4680 0.29 -2.4
5,318,152 - PP_4680 0.29 -0.3
5,318,154 + PP_4680 0.29 -2.8
5,318,155 - PP_4680 0.29 -2.8
5,318,155 - PP_4680 0.29 -1.5
5,318,583 + PP_4680 0.54 -1.3
5,318,584 - PP_4680 0.54 -3.1
5,318,584 - PP_4680 0.54 -3.7
5,318,584 - PP_4680 0.54 -1.2

Or see this region's nucleotide sequence