Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4014 and PP_4015 overlap by 4 nucleotides PP_4015 and PP_4016 are separated by 137 nucleotides PP_4016 and PP_4017 are separated by 75 nucleotides
PP_4014: PP_4014 - tRNA-specific 2-thiouridylase MnmA, at 4,525,070 to 4,526,194
_4014
PP_4015: PP_4015 - HflD-like high frequency lysogenization protein, at 4,526,191 to 4,526,817
_4015
PP_4016: PP_4016 - 5'-phosphoribosyl-4-(N-succinocarboxamide)-5- aminoimidazole lyase (adenylosuccinate lyase), at 4,526,955 to 4,528,325
_4016
PP_4017: PP_4017 - conserved protein of unknown function, at 4,528,401 to 4,529,573
_4017
Position (kb) 4526
4527
4528
4529 Strain fitness (log2 ratio) -1
0
1
2
3 at 4526.596 kb on + strand, within PP_4015 at 4526.596 kb on + strand, within PP_4015 at 4526.596 kb on + strand, within PP_4015 at 4526.596 kb on + strand at 4526.597 kb on - strand, within PP_4015 at 4526.597 kb on - strand, within PP_4015 at 4526.597 kb on - strand, within PP_4015 at 4526.597 kb on - strand, within PP_4015 at 4526.597 kb on - strand, within PP_4015 at 4526.910 kb on + strand at 4526.910 kb on + strand at 4526.910 kb on + strand at 4526.915 kb on + strand at 4528.323 kb on + strand at 4528.323 kb on + strand at 4528.339 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,526,596 + PP_4015 0.65 -0.1 4,526,596 + PP_4015 0.65 +0.8 4,526,596 + PP_4015 0.65 +0.6 4,526,596 + +3.3 4,526,597 - PP_4015 0.65 -0.1 4,526,597 - PP_4015 0.65 -0.7 4,526,597 - PP_4015 0.65 +0.3 4,526,597 - PP_4015 0.65 -0.7 4,526,597 - PP_4015 0.65 +1.2 4,526,910 + -0.4 4,526,910 + -0.9 4,526,910 + -0.8 4,526,915 + +2.8 4,528,323 + -0.2 4,528,323 + +0.4 4,528,339 + -0.2
Or see this region's nucleotide sequence