Strain Fitness in Pseudomonas putida KT2440 around PP_1442

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1440 and PP_1441 overlap by 4 nucleotidesPP_1441 and PP_1442 are separated by 89 nucleotidesPP_1442 and PP_1443 are separated by 151 nucleotides PP_1440: PP_1440 - tRNA (mo5U34)-methyltransferase, at 1,639,994 to 1,640,950 _1440 PP_1441: PP_1441 - tRNA (cmo5U34)-methyltransferase, at 1,640,947 to 1,641,690 _1441 PP_1442: PP_1442 - conserved protein of unknown function, at 1,641,780 to 1,642,172 _1442 PP_1443: PP_1443 - DNA-binding, ATP-dependent protease, at 1,642,324 to 1,644,741 _1443 Position (kb) 1641 1642 1643Strain fitness (log2 ratio) -2 -1 0 1 2at 1640.960 kb on - strandat 1641.048 kb on + strand, within PP_1441at 1641.049 kb on - strand, within PP_1441at 1641.049 kb on - strand, within PP_1441at 1641.108 kb on - strand, within PP_1441at 1641.337 kb on + strand, within PP_1441at 1641.338 kb on - strand, within PP_1441at 1641.386 kb on + strand, within PP_1441at 1641.420 kb on + strand, within PP_1441at 1641.420 kb on + strand, within PP_1441at 1641.506 kb on + strandat 1641.506 kb on + strand, within PP_1441at 1641.732 kb on - strandat 1641.732 kb on - strandat 1641.732 kb on - strandat 1641.848 kb on - strand, within PP_1442at 1641.848 kb on - strand, within PP_1442at 1641.947 kb on - strand, within PP_1442at 1641.973 kb on - strand, within PP_1442at 1641.973 kb on - strand, within PP_1442at 1642.034 kb on + strand, within PP_1442at 1642.502 kb on - strandat 1642.637 kb on - strand, within PP_1443at 1642.709 kb on + strand, within PP_1443at 1642.709 kb on + strand, within PP_1443at 1642.709 kb on + strand, within PP_1443at 1642.710 kb on - strand, within PP_1443at 1642.710 kb on - strand, within PP_1443at 1642.710 kb on - strand, within PP_1443at 1642.710 kb on - strand, within PP_1443at 1642.710 kb on - strand, within PP_1443at 1642.871 kb on - strand, within PP_1443at 1642.871 kb on - strand, within PP_1443at 1642.932 kb on + strand, within PP_1443at 1642.933 kb on - strand, within PP_1443at 1642.933 kb on - strand, within PP_1443at 1642.933 kb on - strand, within PP_1443at 1642.933 kb on - strand, within PP_1443at 1642.933 kb on - strand, within PP_1443at 1643.031 kb on - strand, within PP_1443at 1643.031 kb on - strand, within PP_1443

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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1,640,960 - +1.3
1,641,048 + PP_1441 0.14 -0.3
1,641,049 - PP_1441 0.14 +2.1
1,641,049 - PP_1441 0.14 -1.3
1,641,108 - PP_1441 0.22 -0.9
1,641,337 + PP_1441 0.52 -1.7
1,641,338 - PP_1441 0.53 -0.8
1,641,386 + PP_1441 0.59 -0.2
1,641,420 + PP_1441 0.64 -0.6
1,641,420 + PP_1441 0.64 +0.1
1,641,506 + +0.4
1,641,506 + PP_1441 0.75 +1.0
1,641,732 - +0.4
1,641,732 - -0.1
1,641,732 - -0.8
1,641,848 - PP_1442 0.17 -2.1
1,641,848 - PP_1442 0.17 -1.2
1,641,947 - PP_1442 0.42 -1.0
1,641,973 - PP_1442 0.49 +0.3
1,641,973 - PP_1442 0.49 -1.5
1,642,034 + PP_1442 0.65 -1.5
1,642,502 - +0.1
1,642,637 - PP_1443 0.13 +0.7
1,642,709 + PP_1443 0.16 +0.7
1,642,709 + PP_1443 0.16 -2.3
1,642,709 + PP_1443 0.16 -0.3
1,642,710 - PP_1443 0.16 +0.3
1,642,710 - PP_1443 0.16 +0.7
1,642,710 - PP_1443 0.16 -0.9
1,642,710 - PP_1443 0.16 -0.3
1,642,710 - PP_1443 0.16 +0.8
1,642,871 - PP_1443 0.23 +1.0
1,642,871 - PP_1443 0.23 +0.2
1,642,932 + PP_1443 0.25 -0.5
1,642,933 - PP_1443 0.25 -0.3
1,642,933 - PP_1443 0.25 -2.1
1,642,933 - PP_1443 0.25 +2.2
1,642,933 - PP_1443 0.25 +1.3
1,642,933 - PP_1443 0.25 +0.1
1,643,031 - PP_1443 0.29 +1.9
1,643,031 - PP_1443 0.29 +1.6

Or see this region's nucleotide sequence