Strain Fitness in Pseudomonas putida KT2440 around PP_0614

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0613 and PP_0614 are separated by 1 nucleotidesPP_0614 and PP_0615 are separated by 106 nucleotidesPP_0615 and PP_0616 overlap by 1 nucleotides PP_0613: PP_0613 - Amidase family protein, at 718,507 to 719,916 _0613 PP_0614: PP_0614 - putative N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 1, at 719,918 to 721,195 _0614 PP_0615: PP_0615 - Branched-chain amino acid ABC transporter, ATP-binding protein, at 721,302 to 721,997 _0615 PP_0616: PP_0616 - Branched-chain amino acid ABC transporter, ATP binding protein, at 721,997 to 722,749 _0616 Position (kb) 719 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2 3at 719.026 kb on + strand, within PP_0613at 719.026 kb on + strand, within PP_0613at 719.103 kb on - strand, within PP_0613at 719.131 kb on + strand, within PP_0613at 719.131 kb on + strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.312 kb on + strand, within PP_0613at 719.313 kb on - strand, within PP_0613at 719.313 kb on - strand, within PP_0613at 719.619 kb on + strand, within PP_0613at 719.623 kb on - strand, within PP_0613at 719.861 kb on + strandat 719.861 kb on + strandat 719.862 kb on - strandat 719.862 kb on - strandat 720.108 kb on + strand, within PP_0614at 720.174 kb on + strand, within PP_0614at 720.317 kb on + strand, within PP_0614at 720.318 kb on - strand, within PP_0614at 720.318 kb on - strand, within PP_0614at 720.590 kb on - strand, within PP_0614at 720.604 kb on - strand, within PP_0614at 720.646 kb on - strand, within PP_0614at 720.788 kb on + strand, within PP_0614at 720.788 kb on + strand, within PP_0614at 720.970 kb on + strand, within PP_0614at 720.971 kb on - strand, within PP_0614at 721.073 kb on + strandat 721.073 kb on + strandat 721.230 kb on - strandat 721.238 kb on - strandat 721.259 kb on + strandat 721.260 kb on - strandat 721.260 kb on - strandat 721.288 kb on + strandat 721.288 kb on + strandat 721.289 kb on - strandat 721.289 kb on - strandat 721.289 kb on - strandat 721.289 kb on - strandat 721.289 kb on - strandat 721.399 kb on + strand, within PP_0615at 721.399 kb on + strand, within PP_0615at 721.399 kb on + strand, within PP_0615at 721.399 kb on + strand, within PP_0615at 721.399 kb on + strand, within PP_0615at 721.400 kb on - strand, within PP_0615at 721.400 kb on - strand, within PP_0615at 721.431 kb on + strand, within PP_0615at 721.431 kb on + strand, within PP_0615at 721.431 kb on + strand, within PP_0615at 721.432 kb on - strand, within PP_0615at 721.432 kb on - strand, within PP_0615at 721.444 kb on - strand, within PP_0615at 721.660 kb on + strand, within PP_0615at 721.661 kb on - strand, within PP_0615at 721.661 kb on - strand, within PP_0615at 721.661 kb on - strand, within PP_0615at 721.661 kb on - strand, within PP_0615at 721.661 kb on - strand, within PP_0615at 721.782 kb on - strand, within PP_0615at 721.908 kb on + strand, within PP_0615at 721.966 kb on + strandat 721.966 kb on + strandat 721.969 kb on + strandat 721.969 kb on + strandat 721.970 kb on - strandat 721.970 kb on - strandat 721.970 kb on - strandat 722.016 kb on + strandat 722.017 kb on - strandat 722.144 kb on + strand, within PP_0616at 722.144 kb on + strand, within PP_0616at 722.144 kb on + strand, within PP_0616at 722.145 kb on - strand, within PP_0616at 722.152 kb on + strand, within PP_0616at 722.152 kb on + strand, within PP_0616at 722.153 kb on - strand, within PP_0616

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
remove
719,026 + PP_0613 0.37 -0.2
719,026 + PP_0613 0.37 +0.5
719,103 - PP_0613 0.42 -1.1
719,131 + PP_0613 0.44 -1.3
719,131 + PP_0613 0.44 -0.2
719,132 - PP_0613 0.44 +0.3
719,132 - PP_0613 0.44 -0.2
719,132 - PP_0613 0.44 -0.6
719,132 - PP_0613 0.44 +0.6
719,132 - PP_0613 0.44 -0.4
719,312 + PP_0613 0.57 -1.5
719,313 - PP_0613 0.57 -0.6
719,313 - PP_0613 0.57 +1.7
719,619 + PP_0613 0.79 +1.4
719,623 - PP_0613 0.79 -0.5
719,861 + +0.0
719,861 + +0.1
719,862 - +0.2
719,862 - -0.1
720,108 + PP_0614 0.15 -0.1
720,174 + PP_0614 0.20 -0.6
720,317 + PP_0614 0.31 -1.7
720,318 - PP_0614 0.31 +0.4
720,318 - PP_0614 0.31 -0.6
720,590 - PP_0614 0.53 -0.3
720,604 - PP_0614 0.54 -1.8
720,646 - PP_0614 0.57 -0.9
720,788 + PP_0614 0.68 +0.7
720,788 + PP_0614 0.68 -0.1
720,970 + PP_0614 0.82 +1.1
720,971 - PP_0614 0.82 -0.9
721,073 + -0.1
721,073 + +1.1
721,230 - -0.9
721,238 - -0.9
721,259 + -0.3
721,260 - -0.2
721,260 - +1.0
721,288 + -1.1
721,288 + -0.3
721,289 - +0.3
721,289 - -0.3
721,289 - -1.3
721,289 - +0.1
721,289 - -0.8
721,399 + PP_0615 0.14 +0.4
721,399 + PP_0615 0.14 +0.6
721,399 + PP_0615 0.14 -0.1
721,399 + PP_0615 0.14 -1.0
721,399 + PP_0615 0.14 -0.8
721,400 - PP_0615 0.14 +0.4
721,400 - PP_0615 0.14 -0.2
721,431 + PP_0615 0.19 +0.7
721,431 + PP_0615 0.19 -0.9
721,431 + PP_0615 0.19 -0.3
721,432 - PP_0615 0.19 -0.2
721,432 - PP_0615 0.19 -0.8
721,444 - PP_0615 0.20 -0.0
721,660 + PP_0615 0.51 +2.9
721,661 - PP_0615 0.52 -0.2
721,661 - PP_0615 0.52 -0.7
721,661 - PP_0615 0.52 -1.3
721,661 - PP_0615 0.52 -0.7
721,661 - PP_0615 0.52 -0.8
721,782 - PP_0615 0.69 +1.5
721,908 + PP_0615 0.87 +1.2
721,966 + -1.6
721,966 + +0.6
721,969 + -2.0
721,969 + +1.1
721,970 - -1.5
721,970 - +1.1
721,970 - +1.1
722,016 + -0.2
722,017 - +1.7
722,144 + PP_0616 0.20 -0.4
722,144 + PP_0616 0.20 +0.9
722,144 + PP_0616 0.20 +1.1
722,145 - PP_0616 0.20 +2.3
722,152 + PP_0616 0.21 +0.4
722,152 + PP_0616 0.21 -0.1
722,153 - PP_0616 0.21 +1.0

Or see this region's nucleotide sequence