Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0547 and PP_0548 overlap by 4 nucleotides PP_0548 and PP_0549 overlap by 4 nucleotides PP_0549 and PP_0550 are separated by 107 nucleotides
PP_0547: PP_0547 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 635,777 to 637,126
_0547
PP_0548: PP_0548 - putative phenylacrylic acid decarboxylase, padA1, at 637,123 to 637,752
_0548
PP_0549: PP_0549 - putative Lipoprotein, at 637,749 to 638,036
_0549
PP_0550: PP_0550 - conserved protein of unknown function, at 638,144 to 638,788
_0550
Position (kb) 637
638 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 636.657 kb on + strand, within PP_0547 at 636.657 kb on + strand, within PP_0547 at 636.657 kb on + strand, within PP_0547 at 636.738 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.932 kb on + strand, within PP_0547 at 636.932 kb on + strand, within PP_0547 at 637.849 kb on - strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.873 kb on - strand, within PP_0549 at 637.873 kb on - strand, within PP_0549 at 637.908 kb on + strand, within PP_0549 at 638.008 kb on + strand at 638.009 kb on - strand at 638.009 kb on - strand at 638.064 kb on + strand at 638.065 kb on - strand at 638.065 kb on - strand at 638.074 kb on + strand at 638.145 kb on + strand at 638.239 kb on + strand, within PP_0550 at 638.295 kb on - strand, within PP_0550 at 638.295 kb on - strand, within PP_0550 at 638.432 kb on - strand, within PP_0550 at 638.619 kb on - strand, within PP_0550 at 638.677 kb on + strand, within PP_0550 at 638.723 kb on + strand, within PP_0550 at 638.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 636,657 + PP_0547 0.65 -1.5 636,657 + PP_0547 0.65 -1.1 636,657 + PP_0547 0.65 -2.0 636,738 + PP_0547 0.71 -2.2 636,755 + PP_0547 0.72 -0.4 636,755 + PP_0547 0.72 -2.2 636,755 + PP_0547 0.72 -1.2 636,755 + PP_0547 0.72 -1.7 636,932 + PP_0547 0.86 -1.4 636,932 + PP_0547 0.86 +1.7 637,849 - PP_0549 0.35 +2.5 637,872 + PP_0549 0.43 +1.4 637,872 + PP_0549 0.43 +1.3 637,872 + PP_0549 0.43 +1.7 637,872 + PP_0549 0.43 -1.6 637,872 + PP_0549 0.43 -0.4 637,873 - PP_0549 0.43 -0.7 637,873 - PP_0549 0.43 -0.8 637,908 + PP_0549 0.55 +0.1 638,008 + +0.2 638,009 - +1.0 638,009 - -0.2 638,064 + -1.2 638,065 - -2.3 638,065 - +3.0 638,074 + +0.5 638,145 + -0.1 638,239 + PP_0550 0.15 -0.6 638,295 - PP_0550 0.23 -0.6 638,295 - PP_0550 0.23 -1.8 638,432 - PP_0550 0.45 -0.1 638,619 - PP_0550 0.74 -0.7 638,677 + PP_0550 0.83 +0.7 638,723 + PP_0550 0.90 -0.6 638,724 - -0.3
Or see this region's nucleotide sequence