Strain Fitness in Pseudomonas putida KT2440 around PP_0375

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5444 and PP_0375 are separated by 155 nucleotidesPP_0375 and PP_0376 overlap by 35 nucleotides PP_5444: PP_5444 - protein of unknown function, at 453,734 to 454,660 _5444 PP_0375: PP_0375 - Prolyl oligopeptidase family protein, at 454,816 to 456,654 _0375 PP_0376: PP_0376 - Coenzyme PQQ synthesis protein E, at 456,620 to 457,750 _0376 Position (kb) 454 455 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 453.822 kb on + strandat 453.822 kb on + strandat 453.860 kb on - strand, within PP_5444at 453.860 kb on - strand, within PP_5444at 453.950 kb on - strand, within PP_5444at 454.065 kb on + strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.114 kb on - strand, within PP_5444at 454.152 kb on + strand, within PP_5444at 454.152 kb on + strandat 454.153 kb on - strand, within PP_5444at 454.153 kb on - strand, within PP_5444at 454.153 kb on - strand, within PP_5444at 454.210 kb on - strand, within PP_5444at 454.236 kb on + strand, within PP_5444at 454.236 kb on + strand, within PP_5444at 454.258 kb on + strand, within PP_5444at 454.292 kb on - strand, within PP_5444at 454.292 kb on - strand, within PP_5444at 454.340 kb on - strand, within PP_5444at 454.340 kb on - strand, within PP_5444at 454.388 kb on + strand, within PP_5444at 454.388 kb on + strand, within PP_5444at 454.574 kb on + strandat 454.574 kb on + strandat 454.575 kb on - strandat 454.679 kb on + strandat 454.768 kb on - strandat 454.925 kb on + strandat 454.925 kb on + strandat 454.925 kb on + strandat 454.926 kb on - strandat 454.926 kb on - strandat 454.926 kb on - strandat 454.999 kb on + strandat 455.000 kb on - strand, within PP_0375at 455.000 kb on - strand, within PP_0375at 455.000 kb on - strand, within PP_0375at 455.000 kb on - strand, within PP_0375at 455.046 kb on + strand, within PP_0375at 455.046 kb on + strand, within PP_0375at 455.046 kb on + strand, within PP_0375at 455.047 kb on - strand, within PP_0375at 455.047 kb on - strand, within PP_0375at 455.047 kb on - strand, within PP_0375at 455.123 kb on + strand, within PP_0375at 455.124 kb on - strand, within PP_0375at 455.124 kb on - strand, within PP_0375at 455.237 kb on + strand, within PP_0375at 455.238 kb on - strand, within PP_0375at 455.238 kb on - strand, within PP_0375at 455.238 kb on - strand, within PP_0375at 455.250 kb on + strand, within PP_0375at 455.303 kb on + strand, within PP_0375at 455.304 kb on - strand, within PP_0375at 455.370 kb on - strand, within PP_0375at 455.438 kb on + strand, within PP_0375at 455.466 kb on - strand, within PP_0375at 455.614 kb on + strand, within PP_0375at 455.641 kb on + strand, within PP_0375at 455.641 kb on + strand, within PP_0375at 455.642 kb on - strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.709 kb on - strand, within PP_0375at 455.709 kb on - strand, within PP_0375at 455.709 kb on - strand, within PP_0375at 455.750 kb on + strand, within PP_0375at 455.750 kb on + strand, within PP_0375at 455.750 kb on + strand, within PP_0375at 455.750 kb on + strand, within PP_0375at 455.751 kb on - strandat 455.773 kb on - strand, within PP_0375at 455.773 kb on - strand, within PP_0375at 455.773 kb on - strand, within PP_0375at 455.773 kb on - strand, within PP_0375at 455.862 kb on + strand, within PP_0375at 455.862 kb on + strand, within PP_0375at 455.863 kb on - strand, within PP_0375at 455.863 kb on - strand, within PP_0375at 455.863 kb on - strand, within PP_0375at 456.166 kb on - strand, within PP_0375at 456.176 kb on + strand, within PP_0375at 456.177 kb on - strand, within PP_0375at 456.177 kb on - strand, within PP_0375at 456.340 kb on + strand, within PP_0375at 456.365 kb on + strand, within PP_0375at 456.365 kb on + strand, within PP_0375at 456.366 kb on - strand, within PP_0375at 456.440 kb on + strand, within PP_0375at 456.441 kb on - strand, within PP_0375at 456.455 kb on - strand, within PP_0375at 456.491 kb on + strandat 456.491 kb on + strandat 456.510 kb on + strandat 456.511 kb on - strandat 456.859 kb on - strandat 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.899 kb on - strand, within PP_0376at 456.899 kb on - strand, within PP_0376at 456.899 kb on - strand, within PP_0376at 456.899 kb on - strand, within PP_0376at 456.920 kb on + strand, within PP_0376at 456.920 kb on + strand, within PP_0376at 456.921 kb on - strand, within PP_0376at 456.974 kb on - strand, within PP_0376at 457.041 kb on + strand, within PP_0376at 457.041 kb on + strand, within PP_0376at 457.042 kb on - strand, within PP_0376at 457.045 kb on - strand, within PP_0376at 457.045 kb on - strand, within PP_0376at 457.117 kb on + strand, within PP_0376at 457.118 kb on - strand, within PP_0376at 457.118 kb on - strand, within PP_0376at 457.161 kb on - strand, within PP_0376at 457.185 kb on + strand, within PP_0376at 457.186 kb on - strand, within PP_0376at 457.186 kb on - strand, within PP_0376at 457.492 kb on - strand, within PP_0376at 457.492 kb on - strand, within PP_0376at 457.494 kb on + strand, within PP_0376at 457.495 kb on - strand, within PP_0376

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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453,822 + -0.0
453,822 + -0.5
453,860 - PP_5444 0.14 +0.1
453,860 - PP_5444 0.14 -0.2
453,950 - PP_5444 0.23 -1.0
454,065 + PP_5444 0.36 +0.7
454,066 - PP_5444 0.36 -1.4
454,066 - PP_5444 0.36 +1.1
454,066 - PP_5444 0.36 -0.7
454,066 - PP_5444 0.36 +0.3
454,066 - PP_5444 0.36 -0.4
454,066 - PP_5444 0.36 -1.1
454,114 - PP_5444 0.41 -0.5
454,152 + PP_5444 0.45 -0.8
454,152 + +0.8
454,153 - PP_5444 0.45 -1.4
454,153 - PP_5444 0.45 +4.3
454,153 - PP_5444 0.45 -0.0
454,210 - PP_5444 0.51 +1.6
454,236 + PP_5444 0.54 +1.2
454,236 + PP_5444 0.54 +3.0
454,258 + PP_5444 0.57 -0.9
454,292 - PP_5444 0.60 +1.3
454,292 - PP_5444 0.60 -0.0
454,340 - PP_5444 0.65 -1.0
454,340 - PP_5444 0.65 -1.1
454,388 + PP_5444 0.71 -1.8
454,388 + PP_5444 0.71 -1.7
454,574 + +0.1
454,574 + +0.7
454,575 - -0.9
454,679 + -0.8
454,768 - +0.1
454,925 + +0.8
454,925 + -0.0
454,925 + -0.4
454,926 - -0.0
454,926 - +0.6
454,926 - +1.3
454,999 + -1.2
455,000 - PP_0375 0.10 +0.7
455,000 - PP_0375 0.10 +1.6
455,000 - PP_0375 0.10 -1.4
455,000 - PP_0375 0.10 +5.1
455,046 + PP_0375 0.13 -0.4
455,046 + PP_0375 0.13 +0.1
455,046 + PP_0375 0.13 +0.6
455,047 - PP_0375 0.13 +0.1
455,047 - PP_0375 0.13 -0.7
455,047 - PP_0375 0.13 -0.1
455,123 + PP_0375 0.17 -1.7
455,124 - PP_0375 0.17 -2.3
455,124 - PP_0375 0.17 -0.0
455,237 + PP_0375 0.23 +1.6
455,238 - PP_0375 0.23 +0.0
455,238 - PP_0375 0.23 +0.5
455,238 - PP_0375 0.23 -1.4
455,250 + PP_0375 0.24 +0.5
455,303 + PP_0375 0.26 -0.2
455,304 - PP_0375 0.27 -0.4
455,370 - PP_0375 0.30 -1.6
455,438 + PP_0375 0.34 -0.2
455,466 - PP_0375 0.35 -0.8
455,614 + PP_0375 0.43 -0.7
455,641 + PP_0375 0.45 -2.0
455,641 + PP_0375 0.45 -1.3
455,642 - PP_0375 0.45 +1.6
455,708 + PP_0375 0.49 -0.9
455,708 + PP_0375 0.49 -1.7
455,708 + PP_0375 0.49 +2.8
455,708 + PP_0375 0.49 +1.4
455,708 + PP_0375 0.49 -0.5
455,709 - PP_0375 0.49 +0.2
455,709 - PP_0375 0.49 -2.8
455,709 - PP_0375 0.49 -1.2
455,750 + PP_0375 0.51 +0.9
455,750 + PP_0375 0.51 -1.8
455,750 + PP_0375 0.51 -0.7
455,750 + PP_0375 0.51 +0.5
455,751 - +0.8
455,773 - PP_0375 0.52 +3.6
455,773 - PP_0375 0.52 +3.0
455,773 - PP_0375 0.52 +0.3
455,773 - PP_0375 0.52 +0.5
455,862 + PP_0375 0.57 +0.8
455,862 + PP_0375 0.57 -0.0
455,863 - PP_0375 0.57 +0.5
455,863 - PP_0375 0.57 +0.2
455,863 - PP_0375 0.57 +0.4
456,166 - PP_0375 0.73 -1.0
456,176 + PP_0375 0.74 +3.9
456,177 - PP_0375 0.74 -0.3
456,177 - PP_0375 0.74 +2.3
456,340 + PP_0375 0.83 -0.0
456,365 + PP_0375 0.84 +2.5
456,365 + PP_0375 0.84 +0.9
456,366 - PP_0375 0.84 -0.5
456,440 + PP_0375 0.88 -1.0
456,441 - PP_0375 0.88 -0.8
456,455 - PP_0375 0.89 -0.2
456,491 + +1.4
456,491 + -1.0
456,510 + +1.4
456,511 - -1.3
456,859 - +1.2
456,898 + PP_0376 0.25 +0.1
456,898 + PP_0376 0.25 -2.4
456,898 + PP_0376 0.25 +0.4
456,898 + PP_0376 0.25 +0.7
456,898 + PP_0376 0.25 +0.6
456,898 + PP_0376 0.25 +0.9
456,899 - PP_0376 0.25 -0.3
456,899 - PP_0376 0.25 -0.5
456,899 - PP_0376 0.25 -1.7
456,899 - PP_0376 0.25 -0.9
456,920 + PP_0376 0.27 +1.6
456,920 + PP_0376 0.27 +0.2
456,921 - PP_0376 0.27 -1.1
456,974 - PP_0376 0.31 -0.5
457,041 + PP_0376 0.37 -1.7
457,041 + PP_0376 0.37 +0.1
457,042 - PP_0376 0.37 +0.6
457,045 - PP_0376 0.38 -0.5
457,045 - PP_0376 0.38 -0.9
457,117 + PP_0376 0.44 +1.8
457,118 - PP_0376 0.44 +0.2
457,118 - PP_0376 0.44 -0.0
457,161 - PP_0376 0.48 -1.0
457,185 + PP_0376 0.50 +0.3
457,186 - PP_0376 0.50 -0.5
457,186 - PP_0376 0.50 -0.0
457,492 - PP_0376 0.77 +2.0
457,492 - PP_0376 0.77 -0.3
457,494 + PP_0376 0.77 +1.3
457,495 - PP_0376 0.77 +0.9

Or see this region's nucleotide sequence