Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0317 and PP_0318 are separated by 266 nucleotides PP_0318 and PP_0319 overlap by 4 nucleotides PP_0319 and PP_0320 are separated by 182 nucleotides
PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544
_0317
PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041
_0318
PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340
_0319
PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460
_0320
Position (kb) 383
384 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 382.044 kb on + strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.172 kb on - strand, within PP_0317 at 382.241 kb on - strand, within PP_0317 at 382.287 kb on - strand, within PP_0317 at 382.356 kb on + strand, within PP_0317 at 382.357 kb on - strand, within PP_0317 at 382.439 kb on + strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.464 kb on - strand at 382.464 kb on - strand at 382.523 kb on + strand at 382.704 kb on - strand at 382.732 kb on + strand at 382.733 kb on - strand at 382.747 kb on + strand at 382.747 kb on + strand at 382.756 kb on + strand at 382.804 kb on + strand at 382.805 kb on - strand at 383.223 kb on + strand, within PP_0319 at 383.224 kb on - strand, within PP_0319 at 383.338 kb on + strand at 383.339 kb on - strand at 383.463 kb on + strand at 383.502 kb on + strand at 383.503 kb on - strand at 383.503 kb on - strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.537 kb on + strand at 383.538 kb on - strand at 383.609 kb on + strand at 383.748 kb on - strand, within PP_0320 at 383.814 kb on + strand, within PP_0320 at 383.849 kb on + strand, within PP_0320 at 383.849 kb on + strand, within PP_0320 at 383.849 kb on + strand, within PP_0320 at 383.850 kb on - strand, within PP_0320 at 383.852 kb on + strand, within PP_0320 at 383.852 kb on + strand, within PP_0320 at 383.853 kb on - strand, within PP_0320 at 383.883 kb on + strand, within PP_0320 at 383.883 kb on + strand, within PP_0320 at 383.884 kb on - strand, within PP_0320 at 383.884 kb on - strand, within PP_0320 at 383.886 kb on + strand, within PP_0320 at 383.886 kb on + strand, within PP_0320 at 383.886 kb on + strand, within PP_0320 at 383.887 kb on - strand, within PP_0320 at 383.946 kb on + strand, within PP_0320 at 383.946 kb on + strand, within PP_0320 at 383.947 kb on - strand, within PP_0320 at 384.031 kb on - strand, within PP_0320 at 384.095 kb on - strand, within PP_0320 at 384.269 kb on + strand, within PP_0320 at 384.269 kb on + strand, within PP_0320 at 384.270 kb on - strand, within PP_0320 at 384.301 kb on - strand, within PP_0320
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 382,044 + PP_0317 0.69 -0.7 382,045 - PP_0317 0.69 -1.1 382,045 - PP_0317 0.69 +0.4 382,045 - PP_0317 0.69 +0.2 382,172 - PP_0317 0.77 -0.4 382,241 - PP_0317 0.81 -0.2 382,287 - PP_0317 0.84 -0.6 382,356 + PP_0317 0.88 -2.0 382,357 - PP_0317 0.88 -1.6 382,439 + +0.1 382,440 - -0.4 382,440 - +2.2 382,440 - +0.2 382,464 - +0.2 382,464 - -0.7 382,523 + +0.2 382,704 - +1.1 382,732 + +2.3 382,733 - +2.8 382,747 + -0.1 382,747 + +0.6 382,756 + +1.2 382,804 + +3.0 382,805 - -0.1 383,223 + PP_0319 0.61 -0.9 383,224 - PP_0319 0.61 -0.9 383,338 + -1.0 383,339 - -0.1 383,463 + +0.1 383,502 + -0.2 383,503 - +2.6 383,503 - -0.5 383,516 + -1.3 383,516 + -1.7 383,516 + +0.5 383,528 + -0.8 383,528 + -0.9 383,528 + +0.6 383,528 + -1.1 383,528 + -0.3 383,528 + -0.5 383,528 + +1.4 383,529 - -1.7 383,529 - +1.2 383,529 - +0.4 383,529 - -0.4 383,529 - -2.6 383,537 + -0.2 383,538 - +0.1 383,609 + +1.0 383,748 - PP_0320 0.12 -0.4 383,814 + PP_0320 0.15 -0.2 383,849 + PP_0320 0.17 -0.8 383,849 + PP_0320 0.17 +1.1 383,849 + PP_0320 0.17 -1.7 383,850 - PP_0320 0.17 -0.6 383,852 + PP_0320 0.17 +0.7 383,852 + PP_0320 0.17 +1.0 383,853 - PP_0320 0.17 -1.2 383,883 + PP_0320 0.19 +0.7 383,883 + PP_0320 0.19 +1.0 383,884 - PP_0320 0.19 -2.1 383,884 - PP_0320 0.19 -0.1 383,886 + PP_0320 0.19 +0.5 383,886 + PP_0320 0.19 -1.0 383,886 + PP_0320 0.19 -0.2 383,887 - PP_0320 0.19 +1.2 383,946 + PP_0320 0.22 +0.2 383,946 + PP_0320 0.22 -1.1 383,947 - PP_0320 0.22 -0.2 384,031 - PP_0320 0.26 -1.2 384,095 - PP_0320 0.30 -0.3 384,269 + PP_0320 0.38 -1.1 384,269 + PP_0320 0.38 +0.6 384,270 - PP_0320 0.39 -0.7 384,301 - PP_0320 0.40 +0.3
Or see this region's nucleotide sequence