Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4950 and PP_4951 are separated by 109 nucleotides PP_4951 and PP_4952 are separated by 64 nucleotides
PP_4950: PP_4950 - conserved protein of unknown function, at 5,638,909 to 5,640,228
_4950
PP_4951: PP_4951 - Drug resistance transporter, EmrB/QacA family, at 5,640,338 to 5,641,765
_4951
PP_4952: PP_4952 - ATP-dependent RNA helicase, specific for 23S rRNA, at 5,641,830 to 5,643,215
_4952
Position (kb) 5640
5641
5642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 5639.343 kb on - strand, within PP_4950 at 5639.452 kb on + strand, within PP_4950 at 5639.452 kb on + strand, within PP_4950 at 5639.453 kb on - strand, within PP_4950 at 5639.453 kb on - strand, within PP_4950 at 5639.453 kb on - strand, within PP_4950 at 5639.453 kb on - strand, within PP_4950 at 5639.453 kb on - strand, within PP_4950 at 5639.453 kb on - strand, within PP_4950 at 5639.453 kb on - strand, within PP_4950 at 5639.542 kb on - strand, within PP_4950 at 5639.570 kb on - strand, within PP_4950 at 5639.671 kb on + strand, within PP_4950 at 5639.671 kb on + strand, within PP_4950 at 5639.672 kb on - strand, within PP_4950 at 5639.733 kb on + strand, within PP_4950 at 5639.947 kb on + strand, within PP_4950 at 5639.947 kb on + strand, within PP_4950 at 5639.948 kb on - strand, within PP_4950 at 5639.974 kb on + strand, within PP_4950 at 5640.032 kb on + strand, within PP_4950 at 5640.063 kb on + strand, within PP_4950 at 5640.064 kb on - strand, within PP_4950 at 5640.064 kb on - strand, within PP_4950 at 5640.088 kb on + strand, within PP_4950 at 5640.089 kb on - strand, within PP_4950 at 5640.089 kb on - strand, within PP_4950 at 5640.089 kb on - strand, within PP_4950 at 5640.153 kb on + strand at 5640.154 kb on - strand at 5640.154 kb on - strand at 5640.157 kb on + strand at 5640.158 kb on - strand at 5640.158 kb on - strand at 5640.158 kb on - strand at 5640.301 kb on - strand at 5640.509 kb on + strand, within PP_4951 at 5640.509 kb on + strand, within PP_4951 at 5640.509 kb on + strand, within PP_4951 at 5640.510 kb on - strand, within PP_4951 at 5640.510 kb on - strand, within PP_4951 at 5640.510 kb on - strand, within PP_4951 at 5640.510 kb on - strand, within PP_4951 at 5640.510 kb on - strand, within PP_4951 at 5640.510 kb on - strand, within PP_4951 at 5640.510 kb on - strand, within PP_4951 at 5640.975 kb on + strand, within PP_4951 at 5640.976 kb on - strand, within PP_4951 at 5640.976 kb on - strand, within PP_4951 at 5641.232 kb on + strand, within PP_4951 at 5641.233 kb on - strand, within PP_4951 at 5641.348 kb on + strand, within PP_4951 at 5641.348 kb on + strand, within PP_4951 at 5641.349 kb on - strand, within PP_4951 at 5641.351 kb on + strand, within PP_4951 at 5641.352 kb on - strand, within PP_4951 at 5641.601 kb on - strand, within PP_4951 at 5641.674 kb on + strand at 5641.674 kb on + strand at 5641.675 kb on - strand at 5641.675 kb on - strand at 5641.675 kb on - strand at 5641.787 kb on + strand at 5641.787 kb on + strand at 5641.787 kb on + strand at 5641.788 kb on - strand at 5641.788 kb on - strand at 5641.792 kb on + strand at 5641.792 kb on + strand at 5641.793 kb on - strand at 5641.793 kb on - strand at 5641.793 kb on - strand at 5641.793 kb on - strand at 5641.905 kb on + strand at 5641.905 kb on + strand at 5642.398 kb on - strand, within PP_4952
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,639,343 - PP_4950 0.33 +1.6 5,639,452 + PP_4950 0.41 +0.8 5,639,452 + PP_4950 0.41 -1.0 5,639,453 - PP_4950 0.41 -0.6 5,639,453 - PP_4950 0.41 -0.9 5,639,453 - PP_4950 0.41 -0.2 5,639,453 - PP_4950 0.41 +0.2 5,639,453 - PP_4950 0.41 +0.3 5,639,453 - PP_4950 0.41 -0.2 5,639,453 - PP_4950 0.41 -0.1 5,639,542 - PP_4950 0.48 -0.0 5,639,570 - PP_4950 0.50 +0.2 5,639,671 + PP_4950 0.58 -1.1 5,639,671 + PP_4950 0.58 -0.9 5,639,672 - PP_4950 0.58 +0.1 5,639,733 + PP_4950 0.62 +0.7 5,639,947 + PP_4950 0.79 +0.3 5,639,947 + PP_4950 0.79 +0.8 5,639,948 - PP_4950 0.79 -0.4 5,639,974 + PP_4950 0.81 -0.0 5,640,032 + PP_4950 0.85 +0.5 5,640,063 + PP_4950 0.87 -0.2 5,640,064 - PP_4950 0.88 +0.4 5,640,064 - PP_4950 0.88 -0.5 5,640,088 + PP_4950 0.89 -2.2 5,640,089 - PP_4950 0.89 +0.8 5,640,089 - PP_4950 0.89 -0.1 5,640,089 - PP_4950 0.89 -0.2 5,640,153 + -3.3 5,640,154 - +0.1 5,640,154 - +1.3 5,640,157 + -0.5 5,640,158 - -1.7 5,640,158 - +0.0 5,640,158 - +1.0 5,640,301 - +0.3 5,640,509 + PP_4951 0.12 -1.8 5,640,509 + PP_4951 0.12 +0.2 5,640,509 + PP_4951 0.12 +0.6 5,640,510 - PP_4951 0.12 -3.2 5,640,510 - PP_4951 0.12 +0.2 5,640,510 - PP_4951 0.12 +0.5 5,640,510 - PP_4951 0.12 +1.4 5,640,510 - PP_4951 0.12 +1.3 5,640,510 - PP_4951 0.12 +5.9 5,640,510 - PP_4951 0.12 +0.9 5,640,975 + PP_4951 0.45 -0.8 5,640,976 - PP_4951 0.45 -0.4 5,640,976 - PP_4951 0.45 -0.3 5,641,232 + PP_4951 0.63 +0.3 5,641,233 - PP_4951 0.63 +0.5 5,641,348 + PP_4951 0.71 +1.3 5,641,348 + PP_4951 0.71 -0.0 5,641,349 - PP_4951 0.71 +0.4 5,641,351 + PP_4951 0.71 +2.0 5,641,352 - PP_4951 0.71 +1.0 5,641,601 - PP_4951 0.88 +0.3 5,641,674 + +0.5 5,641,674 + +0.9 5,641,675 - +1.1 5,641,675 - -0.2 5,641,675 - +0.9 5,641,787 + +0.1 5,641,787 + -0.5 5,641,787 + -0.3 5,641,788 - -0.7 5,641,788 - +0.1 5,641,792 + -1.4 5,641,792 + +2.2 5,641,793 - -0.7 5,641,793 - +1.5 5,641,793 - +0.5 5,641,793 - -0.1 5,641,905 + -0.8 5,641,905 + -1.9 5,642,398 - PP_4952 0.41 -0.1
Or see this region's nucleotide sequence