Strain Fitness in Pseudomonas putida KT2440 around PP_3613

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
4,104,800	+		PP_3612	0.63	-0.5
4,104,800	+		PP_3612	0.63	-0.2
4,104,801	-		PP_3612	0.63	+0.3
4,104,821	+		PP_3612	0.64	+0.6
4,104,821	+		PP_3612	0.64	+0.3
4,104,822	-		PP_3612	0.64	+0.5
4,104,896	+		PP_3612	0.67	-0.2
4,104,923	+		PP_3612	0.68	+1.8
4,104,923	+		PP_3612	0.68	+1.5
4,104,923	+		PP_3612	0.68	+0.8
4,104,923	+		PP_3612	0.68	+1.0
4,104,923	+		PP_3612	0.68	-0.8
4,104,923	+		PP_3612	0.68	+0.1
4,104,924	-		PP_3612	0.69	+3.8
4,104,924	-		PP_3612	0.69	-0.1
4,104,924	-		PP_3612	0.69	+0.3
4,104,924	-		PP_3612	0.69	+0.7
4,104,924	-		PP_3612	0.69	+0.9
4,104,924	-		PP_3612	0.69	+0.7
4,104,924	-		PP_3612	0.69	-2.3
4,104,944	+		PP_3612	0.69	-0.5
4,104,944	+		PP_3612	0.69	-0.0
4,104,944	+		PP_3612	0.69	-0.2
4,104,945	-		PP_3612	0.70	+0.1
4,105,016	+		PP_3612	0.73	+0.4
4,105,135	-		PP_3612	0.78	-0.1
4,105,153	+		PP_3612	0.79	-0.9
4,105,208	+		PP_3612	0.82	+0.8
4,105,208	+		PP_3612	0.82	+0.8
4,105,209	-		PP_3612	0.82	+0.3
4,105,209	-				+1.2
4,105,209	-		PP_3612	0.82	+3.7
4,105,209	-		PP_3612	0.82	+0.4
4,105,217	+		PP_3612	0.82	-0.8
4,105,218	-		PP_3612	0.82	-0.2
4,105,223	+		PP_3612	0.83	-0.2
4,105,224	-		PP_3612	0.83	+1.3
4,105,224	-		PP_3612	0.83	-0.5
4,105,224	-		PP_3612	0.83	-0.7
4,105,224	-		PP_3612	0.83	+1.1
4,105,329	+		PP_3612	0.88	-0.5
4,105,329	+		PP_3612	0.88	-1.6
4,105,329	+		PP_3612	0.88	-0.4
4,105,329	+		PP_3612	0.88	+0.0
4,105,329	+		PP_3612	0.88	+0.1
4,105,329	+		PP_3612	0.88	+0.5
4,105,373	+		PP_3612	0.90	+0.2
4,105,373	+		PP_3612	0.90	+0.6
4,105,424	+				+0.6
4,105,424	+				-0.3
4,105,424	+				-0.6
4,105,425	-				+0.3
4,105,425	-				+1.1
4,105,425	-				+2.2
4,105,425	-				-2.9
4,105,427	-				+0.6
4,105,451	+				+0.6
4,105,451	+				+0.3
4,105,508	+				-0.4
4,105,508	+				+0.2
4,105,509	-				+0.1
4,105,511	+				+0.1
4,105,511	+				+0.3
4,105,511	+				-0.8
4,105,583	+				-1.1
4,105,584	-				-0.6
4,105,674	-				+0.3
4,105,687	+				-1.5
4,105,688	-				+0.8
4,105,708	+				-0.9
4,105,708	+				-0.7
4,105,709	-				+0.2
4,105,869	+		PP_3613	0.15	+0.2
4,105,870	-		PP_3613	0.15	-0.2
4,105,870	-		PP_3613	0.15	-1.0
4,105,870	-		PP_3613	0.15	-0.6
4,105,995	+		PP_3613	0.24	+1.0
4,105,995	+		PP_3613	0.24	-0.7
4,105,995	+		PP_3613	0.24	-1.3
4,106,070	+		PP_3613	0.30	-1.8
4,106,071	-		PP_3613	0.30	-1.4
4,106,071	-		PP_3613	0.30	-0.2
4,106,076	+		PP_3613	0.31	+3.9
4,106,077	-		PP_3613	0.31	-0.6
4,106,088	+		PP_3613	0.32	+1.1
4,106,088	+		PP_3613	0.32	+0.2
4,106,088	+		PP_3613	0.32	+0.1
4,106,088	+		PP_3613	0.32	+2.5
4,106,088	+		PP_3613	0.32	+0.7
4,106,088	+		PP_3613	0.32	-0.7
4,106,088	+		PP_3613	0.32	-0.3
4,106,088	+		PP_3613	0.32	+0.4
4,106,089	-		PP_3613	0.32	-0.7
4,106,089	-		PP_3613	0.32	+1.8
4,106,089	-		PP_3613	0.32	-0.4
4,106,089	-		PP_3613	0.32	-0.2
4,106,089	-		PP_3613	0.32	+0.8
4,106,089	-		PP_3613	0.32	+0.3
4,106,089	-		PP_3613	0.32	+0.0
4,106,089	-		PP_3613	0.32	+0.6
4,106,106	-		PP_3613	0.33	-0.1
4,106,106	-		PP_3613	0.33	-0.3
4,106,212	+		PP_3613	0.41	+0.7
4,106,337	+		PP_3613	0.51	+0.2
4,106,337	+		PP_3613	0.51	-1.1
4,106,337	+		PP_3613	0.51	-0.2
4,106,338	-		PP_3613	0.51	+0.4
4,106,338	-		PP_3613	0.51	-1.9
4,106,338	-		PP_3613	0.51	-1.1
4,106,338	-		PP_3613	0.51	+2.8
4,106,338	-		PP_3613	0.51	+0.9
4,106,486	+		PP_3613	0.62	+3.6
4,106,486	+		PP_3613	0.62	-0.4
4,106,486	+		PP_3613	0.62	+0.7
4,106,487	-		PP_3613	0.62	-0.4
4,106,487	-		PP_3613	0.62	+0.4
4,106,490	+		PP_3613	0.63	-0.5
4,106,490	+		PP_3613	0.63	-1.7
4,106,491	-		PP_3613	0.63	-1.7
4,106,491	-		PP_3613	0.63	+4.1
4,106,491	-		PP_3613	0.63	+1.0
4,106,508	+		PP_3613	0.64	-1.3
4,106,555	+		PP_3613	0.68	-0.5
4,106,556	-		PP_3613	0.68	+0.9
4,106,556	-		PP_3613	0.68	-1.8
4,106,562	+		PP_3613	0.68	-0.8
4,106,562	+		PP_3613	0.68	+0.6
4,106,562	+		PP_3613	0.68	+0.0
4,106,563	-		PP_3613	0.68	+0.1
4,106,931	-				-1.1
4,106,950	+				+0.6
4,106,950	+				+0.0
4,106,950	+				-0.8
4,106,951	-				+0.2
4,106,951	-				+0.1
4,107,143	+		PP_3614	0.41	+0.5
4,107,143	+		PP_3614	0.41	+1.1
4,107,143	+		PP_3614	0.41	+0.5
4,107,144	-		PP_3614	0.41	-0.4
4,107,144	-		PP_3614	0.41	+0.8
4,107,282	-		PP_3614	0.73	-0.0
4,107,364	-				-0.4
4,107,450	+				+0.6
4,107,450	+				-0.5
4,107,495	-				+0.3
4,107,513	-		PP_3615	0.14	-0.6
4,107,516	+		PP_3615	0.14	-0.2
4,107,520	+		PP_3615	0.16	-0.6
4,107,559	+		PP_3615	0.26	+1.1
4,107,560	-		PP_3615	0.26	+0.9
4,107,560	-		PP_3615	0.26	+1.1
4,107,560	-		PP_3615	0.26	+1.4
4,107,581	-		PP_3615	0.31	+0.2
4,107,581	-		PP_3615	0.31	-0.0
4,107,656	-		PP_3615	0.51	+0.1
4,107,735	+				+1.8
4,107,735	+		PP_3615	0.71	-0.8
4,107,735	+		PP_3615	0.71	+0.3
4,107,736	-		PP_3615	0.71	-1.4
4,107,736	-		PP_3615	0.71	-0.2
4,107,736	-		PP_3615	0.71	-0.1
4,107,736	-		PP_3615	0.71	+0.4
4,107,736	-		PP_3615	0.71	-1.6
4,107,736	-		PP_3615	0.71	-0.4
4,107,768	+		PP_3615	0.80	-0.2
4,107,769	-		PP_3615	0.80	+0.3
4,107,769	-		PP_3615	0.80	-0.4
4,107,850	+				+0.2
4,107,850	+				-0.9
4,107,853	-				-0.3
4,107,878	+				+0.9
4,107,907	-				+1.8
4,107,923	-				-0.2
4,107,923	-				+0.3
4,107,926	+				+0.1