Strain Fitness in Pseudomonas putida KT2440 around PP_5622

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3697 and PP_5622 overlap by 4 nucleotidesPP_5622 and PP_3698 are separated by 2 nucleotides PP_3697: PP_3697 - conserved protein of unknown function, at 4,214,958 to 4,217,042 _3697 PP_5622: PP_5622 - conserved protein of unknown function, at 4,217,039 to 4,217,794 _5622 PP_3698: PP_3698 - conserved protein of unknown function, at 4,217,797 to 4,219,296 _3698 Position (kb) 4217 4218Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4216.040 kb on - strand, within PP_3697at 4216.047 kb on + strand, within PP_3697at 4216.048 kb on - strand, within PP_3697at 4216.048 kb on - strand, within PP_3697at 4216.048 kb on - strand, within PP_3697at 4216.048 kb on - strand, within PP_3697at 4216.048 kb on - strand, within PP_3697at 4216.048 kb on - strand, within PP_3697at 4216.244 kb on - strand, within PP_3697at 4216.494 kb on + strand, within PP_3697at 4216.494 kb on + strand, within PP_3697at 4216.494 kb on + strand, within PP_3697at 4216.495 kb on - strand, within PP_3697at 4216.495 kb on - strand, within PP_3697at 4216.498 kb on + strand, within PP_3697at 4216.498 kb on + strand, within PP_3697at 4216.499 kb on - strand, within PP_3697at 4216.518 kb on + strand, within PP_3697at 4216.539 kb on - strand, within PP_3697at 4216.539 kb on - strand, within PP_3697at 4216.579 kb on + strand, within PP_3697at 4216.580 kb on - strand, within PP_3697at 4216.580 kb on - strand, within PP_3697at 4216.580 kb on - strand, within PP_3697at 4216.580 kb on - strand, within PP_3697at 4216.580 kb on - strand, within PP_3697at 4216.737 kb on + strand, within PP_3697at 4216.737 kb on + strand, within PP_3697at 4216.738 kb on - strand, within PP_3697at 4216.738 kb on - strand, within PP_3697at 4216.806 kb on + strand, within PP_3697at 4216.806 kb on + strand, within PP_3697at 4216.807 kb on - strand, within PP_3697at 4216.807 kb on - strand, within PP_3697at 4216.810 kb on + strand, within PP_3697at 4216.811 kb on - strand, within PP_3697at 4216.811 kb on - strand, within PP_3697at 4216.862 kb on - strandat 4216.862 kb on - strandat 4216.956 kb on + strandat 4216.956 kb on + strandat 4216.956 kb on + strandat 4216.956 kb on + strandat 4216.956 kb on + strandat 4216.957 kb on - strandat 4216.957 kb on - strandat 4216.957 kb on - strandat 4216.959 kb on - strandat 4216.971 kb on + strandat 4216.972 kb on - strandat 4216.981 kb on + strandat 4216.996 kb on + strandat 4216.996 kb on + strandat 4216.996 kb on + strandat 4216.997 kb on - strandat 4216.997 kb on - strandat 4216.997 kb on - strandat 4216.997 kb on - strandat 4217.020 kb on + strandat 4217.020 kb on + strandat 4217.021 kb on - strandat 4217.021 kb on - strandat 4217.021 kb on - strandat 4217.174 kb on + strand, within PP_5622at 4217.175 kb on - strand, within PP_5622at 4217.175 kb on - strand, within PP_5622at 4217.175 kb on - strand, within PP_5622at 4217.175 kb on - strand, within PP_5622at 4217.191 kb on + strand, within PP_5622at 4217.191 kb on + strand, within PP_5622at 4217.191 kb on + strand, within PP_5622at 4217.191 kb on + strand, within PP_5622at 4217.192 kb on - strand, within PP_5622at 4217.192 kb on - strandat 4217.192 kb on - strand, within PP_5622at 4217.192 kb on - strand, within PP_5622at 4217.192 kb on - strand, within PP_5622at 4217.194 kb on + strand, within PP_5622at 4217.194 kb on + strand, within PP_5622at 4217.195 kb on - strand, within PP_5622at 4217.195 kb on - strand, within PP_5622at 4217.195 kb on - strand, within PP_5622at 4217.195 kb on - strand, within PP_5622at 4217.195 kb on - strand, within PP_5622at 4217.195 kb on - strand, within PP_5622at 4217.198 kb on + strand, within PP_5622at 4217.198 kb on + strand, within PP_5622at 4217.199 kb on - strand, within PP_5622at 4217.199 kb on - strand, within PP_5622at 4217.199 kb on - strand, within PP_5622at 4217.199 kb on - strand, within PP_5622at 4217.199 kb on - strand, within PP_5622at 4217.289 kb on + strand, within PP_5622at 4217.290 kb on - strand, within PP_5622at 4217.290 kb on - strand, within PP_5622at 4217.290 kb on - strand, within PP_5622at 4217.293 kb on + strand, within PP_5622at 4217.293 kb on + strand, within PP_5622at 4217.293 kb on + strand, within PP_5622at 4217.293 kb on + strand, within PP_5622at 4217.293 kb on + strand, within PP_5622at 4217.293 kb on + strand, within PP_5622at 4217.293 kb on + strand, within PP_5622at 4217.293 kb on + strand, within PP_5622at 4217.294 kb on - strand, within PP_5622at 4217.294 kb on - strand, within PP_5622at 4217.294 kb on - strand, within PP_5622at 4217.294 kb on - strand, within PP_5622at 4217.294 kb on - strand, within PP_5622at 4217.294 kb on - strand, within PP_5622at 4217.294 kb on - strand, within PP_5622at 4217.294 kb on - strand, within PP_5622at 4217.306 kb on + strand, within PP_5622at 4217.307 kb on - strand, within PP_5622at 4217.307 kb on - strand, within PP_5622at 4217.307 kb on - strand, within PP_5622at 4217.318 kb on + strand, within PP_5622at 4217.318 kb on + strand, within PP_5622at 4217.318 kb on + strand, within PP_5622at 4217.319 kb on - strand, within PP_5622at 4217.319 kb on - strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.422 kb on + strand, within PP_5622at 4217.423 kb on - strand, within PP_5622at 4217.423 kb on - strand, within PP_5622at 4217.423 kb on - strand, within PP_5622at 4217.423 kb on - strand, within PP_5622at 4217.423 kb on - strand, within PP_5622at 4217.423 kb on - strand, within PP_5622at 4217.513 kb on + strand, within PP_5622at 4217.552 kb on + strand, within PP_5622at 4217.552 kb on + strand, within PP_5622at 4217.552 kb on + strand, within PP_5622at 4217.553 kb on - strand, within PP_5622at 4217.553 kb on - strand, within PP_5622at 4217.583 kb on + strand, within PP_5622at 4217.583 kb on + strand, within PP_5622at 4217.584 kb on - strand, within PP_5622at 4217.625 kb on + strand, within PP_5622at 4217.660 kb on - strand, within PP_5622at 4217.856 kb on + strandat 4217.917 kb on + strandat 4217.917 kb on + strandat 4217.918 kb on - strandat 4217.918 kb on - strandat 4217.918 kb on - strandat 4217.918 kb on - strandat 4217.918 kb on - strandat 4217.987 kb on - strand, within PP_3698at 4218.115 kb on + strand, within PP_3698at 4218.115 kb on + strand, within PP_3698at 4218.115 kb on + strand, within PP_3698at 4218.115 kb on + strand, within PP_3698at 4218.115 kb on + strand, within PP_3698at 4218.116 kb on - strand, within PP_3698at 4218.216 kb on + strand, within PP_3698at 4218.217 kb on - strand, within PP_3698at 4218.217 kb on - strand, within PP_3698at 4218.278 kb on - strand, within PP_3698at 4218.388 kb on + strand, within PP_3698at 4218.389 kb on - strand, within PP_3698at 4218.389 kb on - strand, within PP_3698at 4218.389 kb on - strand, within PP_3698at 4218.392 kb on - strand, within PP_3698at 4218.449 kb on + strand, within PP_3698at 4218.449 kb on + strand, within PP_3698at 4218.450 kb on - strand, within PP_3698at 4218.512 kb on - strand, within PP_3698at 4218.523 kb on + strand, within PP_3698at 4218.523 kb on + strandat 4218.523 kb on + strand, within PP_3698at 4218.524 kb on - strand, within PP_3698at 4218.645 kb on + strand, within PP_3698at 4218.675 kb on + strand, within PP_3698at 4218.731 kb on + strand, within PP_3698at 4218.731 kb on + strand, within PP_3698at 4218.732 kb on - strand, within PP_3698at 4218.732 kb on - strand, within PP_3698at 4218.732 kb on - strand, within PP_3698at 4218.778 kb on + strand, within PP_3698at 4218.779 kb on - strand, within PP_3698at 4218.779 kb on - strand, within PP_3698at 4218.779 kb on - strand, within PP_3698at 4218.779 kb on - strand, within PP_3698

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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4,216,040 - PP_3697 0.52 -0.1
4,216,047 + PP_3697 0.52 -2.2
4,216,048 - PP_3697 0.52 -2.0
4,216,048 - PP_3697 0.52 -0.9
4,216,048 - PP_3697 0.52 -0.4
4,216,048 - PP_3697 0.52 -1.1
4,216,048 - PP_3697 0.52 -0.7
4,216,048 - PP_3697 0.52 -0.2
4,216,244 - PP_3697 0.62 +0.6
4,216,494 + PP_3697 0.74 +0.3
4,216,494 + PP_3697 0.74 +0.5
4,216,494 + PP_3697 0.74 -1.1
4,216,495 - PP_3697 0.74 +0.7
4,216,495 - PP_3697 0.74 +0.3
4,216,498 + PP_3697 0.74 +0.8
4,216,498 + PP_3697 0.74 -1.7
4,216,499 - PP_3697 0.74 -0.9
4,216,518 + PP_3697 0.75 -0.5
4,216,539 - PP_3697 0.76 +0.6
4,216,539 - PP_3697 0.76 -0.1
4,216,579 + PP_3697 0.78 -1.6
4,216,580 - PP_3697 0.78 +0.6
4,216,580 - PP_3697 0.78 -0.1
4,216,580 - PP_3697 0.78 -0.3
4,216,580 - PP_3697 0.78 -0.0
4,216,580 - PP_3697 0.78 -1.2
4,216,737 + PP_3697 0.85 -0.5
4,216,737 + PP_3697 0.85 +2.7
4,216,738 - PP_3697 0.85 +1.0
4,216,738 - PP_3697 0.85 -0.5
4,216,806 + PP_3697 0.89 -1.0
4,216,806 + PP_3697 0.89 +0.2
4,216,807 - PP_3697 0.89 -0.2
4,216,807 - PP_3697 0.89 +0.1
4,216,810 + PP_3697 0.89 +0.1
4,216,811 - PP_3697 0.89 +0.5
4,216,811 - PP_3697 0.89 -0.5
4,216,862 - -0.4
4,216,862 - +2.4
4,216,956 + +0.7
4,216,956 + +1.8
4,216,956 + +0.2
4,216,956 + -0.6
4,216,956 + -0.2
4,216,957 - -0.5
4,216,957 - -1.0
4,216,957 - +0.8
4,216,959 - +0.7
4,216,971 + -0.6
4,216,972 - -0.9
4,216,981 + -1.6
4,216,996 + -0.8
4,216,996 + -0.0
4,216,996 + -0.5
4,216,997 - -0.5
4,216,997 - -0.6
4,216,997 - -0.1
4,216,997 - +0.8
4,217,020 + +1.1
4,217,020 + +0.1
4,217,021 - -1.1
4,217,021 - -0.4
4,217,021 - +1.4
4,217,174 + PP_5622 0.18 -0.9
4,217,175 - PP_5622 0.18 +0.2
4,217,175 - PP_5622 0.18 +0.7
4,217,175 - PP_5622 0.18 -0.3
4,217,175 - PP_5622 0.18 -1.6
4,217,191 + PP_5622 0.20 -0.2
4,217,191 + PP_5622 0.20 +0.8
4,217,191 + PP_5622 0.20 -0.1
4,217,191 + PP_5622 0.20 -0.1
4,217,192 - PP_5622 0.20 +0.5
4,217,192 - +0.5
4,217,192 - PP_5622 0.20 -0.7
4,217,192 - PP_5622 0.20 -0.2
4,217,192 - PP_5622 0.20 +0.1
4,217,194 + PP_5622 0.21 -1.5
4,217,194 + PP_5622 0.21 -0.6
4,217,195 - PP_5622 0.21 +0.9
4,217,195 - PP_5622 0.21 -2.1
4,217,195 - PP_5622 0.21 +1.3
4,217,195 - PP_5622 0.21 +0.1
4,217,195 - PP_5622 0.21 +0.2
4,217,195 - PP_5622 0.21 +4.7
4,217,198 + PP_5622 0.21 -1.1
4,217,198 + PP_5622 0.21 +0.5
4,217,199 - PP_5622 0.21 +0.3
4,217,199 - PP_5622 0.21 -0.7
4,217,199 - PP_5622 0.21 -2.1
4,217,199 - PP_5622 0.21 -0.5
4,217,199 - PP_5622 0.21 -2.5
4,217,289 + PP_5622 0.33 -1.1
4,217,290 - PP_5622 0.33 +0.6
4,217,290 - PP_5622 0.33 -0.4
4,217,290 - PP_5622 0.33 -2.8
4,217,293 + PP_5622 0.34 +1.7
4,217,293 + PP_5622 0.34 -0.1
4,217,293 + PP_5622 0.34 +0.5
4,217,293 + PP_5622 0.34 +0.8
4,217,293 + PP_5622 0.34 -0.8
4,217,293 + PP_5622 0.34 +0.6
4,217,293 + PP_5622 0.34 -1.5
4,217,293 + PP_5622 0.34 +0.6
4,217,294 - PP_5622 0.34 +0.1
4,217,294 - PP_5622 0.34 +0.9
4,217,294 - PP_5622 0.34 -1.2
4,217,294 - PP_5622 0.34 +3.1
4,217,294 - PP_5622 0.34 -2.4
4,217,294 - PP_5622 0.34 -1.3
4,217,294 - PP_5622 0.34 +1.2
4,217,294 - PP_5622 0.34 -0.0
4,217,306 + PP_5622 0.35 +0.8
4,217,307 - PP_5622 0.35 -0.5
4,217,307 - PP_5622 0.35 +0.5
4,217,307 - PP_5622 0.35 -0.3
4,217,318 + PP_5622 0.37 +1.3
4,217,318 + PP_5622 0.37 -0.9
4,217,318 + PP_5622 0.37 +4.0
4,217,319 - PP_5622 0.37 -2.2
4,217,319 - PP_5622 0.37 -0.5
4,217,422 + PP_5622 0.51 +0.9
4,217,422 + PP_5622 0.51 +0.4
4,217,422 + PP_5622 0.51 +0.4
4,217,422 + PP_5622 0.51 -1.5
4,217,422 + PP_5622 0.51 -0.3
4,217,422 + PP_5622 0.51 -1.9
4,217,422 + PP_5622 0.51 -2.0
4,217,422 + PP_5622 0.51 -1.6
4,217,422 + PP_5622 0.51 -0.2
4,217,422 + PP_5622 0.51 +0.4
4,217,422 + PP_5622 0.51 -0.3
4,217,423 - PP_5622 0.51 +0.4
4,217,423 - PP_5622 0.51 +0.7
4,217,423 - PP_5622 0.51 -0.4
4,217,423 - PP_5622 0.51 -0.7
4,217,423 - PP_5622 0.51 -0.4
4,217,423 - PP_5622 0.51 +1.4
4,217,513 + PP_5622 0.63 -2.2
4,217,552 + PP_5622 0.68 -0.3
4,217,552 + PP_5622 0.68 +0.1
4,217,552 + PP_5622 0.68 +0.3
4,217,553 - PP_5622 0.68 -0.4
4,217,553 - PP_5622 0.68 +1.4
4,217,583 + PP_5622 0.72 +0.3
4,217,583 + PP_5622 0.72 -1.3
4,217,584 - PP_5622 0.72 -0.1
4,217,625 + PP_5622 0.78 +0.8
4,217,660 - PP_5622 0.82 +1.4
4,217,856 + +0.8
4,217,917 + -0.1
4,217,917 + +1.0
4,217,918 - -0.7
4,217,918 - +0.2
4,217,918 - +3.1
4,217,918 - -0.4
4,217,918 - +0.3
4,217,987 - PP_3698 0.13 +0.5
4,218,115 + PP_3698 0.21 +0.9
4,218,115 + PP_3698 0.21 -0.1
4,218,115 + PP_3698 0.21 +0.9
4,218,115 + PP_3698 0.21 +2.3
4,218,115 + PP_3698 0.21 -0.1
4,218,116 - PP_3698 0.21 +0.9
4,218,216 + PP_3698 0.28 +0.1
4,218,217 - PP_3698 0.28 +1.2
4,218,217 - PP_3698 0.28 +1.4
4,218,278 - PP_3698 0.32 -0.2
4,218,388 + PP_3698 0.39 -0.4
4,218,389 - PP_3698 0.39 +0.9
4,218,389 - PP_3698 0.39 +0.6
4,218,389 - PP_3698 0.39 +0.5
4,218,392 - PP_3698 0.40 +0.1
4,218,449 + PP_3698 0.43 -0.1
4,218,449 + PP_3698 0.43 -0.0
4,218,450 - PP_3698 0.44 +0.3
4,218,512 - PP_3698 0.48 +0.1
4,218,523 + PP_3698 0.48 +1.7
4,218,523 + +0.9
4,218,523 + PP_3698 0.48 +0.8
4,218,524 - PP_3698 0.48 -0.2
4,218,645 + PP_3698 0.57 -0.1
4,218,675 + PP_3698 0.59 -0.2
4,218,731 + PP_3698 0.62 -0.1
4,218,731 + PP_3698 0.62 +0.7
4,218,732 - PP_3698 0.62 -0.6
4,218,732 - PP_3698 0.62 -0.1
4,218,732 - PP_3698 0.62 +0.5
4,218,778 + PP_3698 0.65 -0.3
4,218,779 - PP_3698 0.65 -0.2
4,218,779 - PP_3698 0.65 +0.4
4,218,779 - PP_3698 0.65 +1.9
4,218,779 - PP_3698 0.65 +1.3

Or see this region's nucleotide sequence