Strain Fitness in Pseudomonas putida KT2440 around PP_5406

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
6,164,348	+		PP_5405	0.54	-2.4
6,164,384	-		PP_5405	0.55	-0.4
6,164,493	+		PP_5405	0.61	+0.4
6,164,494	-		PP_5405	0.61	+1.2
6,164,564	+		PP_5405	0.64	+0.0
6,164,564	+		PP_5405	0.64	-0.3
6,164,565	-		PP_5405	0.64	+0.2
6,164,565	-		PP_5405	0.64	-1.0
6,164,565	-		PP_5405	0.64	-2.5
6,164,589	+		PP_5405	0.66	+0.6
6,164,589	+		PP_5405	0.66	-0.4
6,164,603	+		PP_5405	0.66	-1.4
6,164,603	+		PP_5405	0.66	+0.6
6,164,635	-		PP_5405	0.68	-0.6
6,164,653	+		PP_5405	0.69	+0.2
6,164,733	+		PP_5405	0.73	-2.0
6,164,733	+		PP_5405	0.73	+0.1
6,164,733	+		PP_5405	0.73	+0.7
6,164,733	+		PP_5405	0.73	+0.4
6,164,733	+		PP_5405	0.73	-0.2
6,164,766	+		PP_5405	0.74	-1.0
6,164,796	+		PP_5405	0.76	+0.8
6,164,797	-		PP_5405	0.76	-0.2
6,164,797	-		PP_5405	0.76	+0.6
6,164,797	-		PP_5405	0.76	+0.4
6,164,797	-		PP_5405	0.76	+2.1
6,164,797	-		PP_5405	0.76	-1.1
6,164,797	-		PP_5405	0.76	+3.1
6,164,816	+		PP_5405	0.77	-0.6
6,164,816	+		PP_5405	0.77	-0.2
6,164,817	-		PP_5405	0.77	+0.2
6,164,817	-		PP_5405	0.77	+1.6
6,164,817	-		PP_5405	0.77	-0.4
6,164,817	-		PP_5405	0.77	-0.9
6,164,817	-		PP_5405	0.77	+0.4
6,164,817	-		PP_5405	0.77	-1.6
6,164,817	-		PP_5405	0.77	+0.3
6,164,817	-		PP_5405	0.77	+1.6
6,164,817	-		PP_5405	0.77	-1.3
6,164,822	+		PP_5405	0.77	-1.3
6,164,823	-		PP_5405	0.77	-1.0
6,164,823	-		PP_5405	0.77	-0.6
6,164,823	-		PP_5405	0.77	+1.3
6,164,883	+		PP_5405	0.80	-0.9
6,164,883	+		PP_5405	0.80	-0.2
6,164,883	+		PP_5405	0.80	-1.7
6,164,884	-		PP_5405	0.80	-0.5
6,164,888	-		PP_5405	0.80	-0.7
6,164,979	-		PP_5405	0.85	-0.4
6,165,042	+		PP_5405	0.88	-1.9
6,165,043	-		PP_5405	0.88	+0.1
6,165,043	-		PP_5405	0.88	+1.5
6,165,043	-		PP_5405	0.88	-0.7
6,165,043	-		PP_5405	0.88	-0.2
6,165,211	+				-1.7
6,165,211	+				+0.4
6,165,212	-				-0.8
6,165,212	-				-0.4
6,165,218	+				+1.4
6,165,218	+				+1.4
6,165,219	-				-0.6
6,165,219	-				-0.4
6,165,220	+				+0.7
6,165,220	+				-2.7
6,165,220	+				+1.1
6,165,220	+				-0.5
6,165,220	+				-1.2
6,165,220	+				-0.9
6,165,220	+				+2.3
6,165,220	+				+0.3
6,165,220	+				-1.5
6,165,220	+				+0.3
6,165,220	+				+0.2
6,165,220	+				+1.2
6,165,220	+				+1.3
6,165,220	+				-0.7
6,165,221	-				-1.4
6,165,221	-				+0.8
6,165,221	-				-1.0
6,165,221	-				+0.9
6,165,221	-				-1.4
6,165,221	-				-0.3
6,165,221	-				+0.6
6,165,221	-				+0.8
6,165,221	-				-0.3
6,165,221	-				+0.9
6,165,221	-				+0.6
6,165,221	-				+0.3
6,165,221	-				+1.0
6,165,241	-				+1.1
6,165,362	+				-1.6
6,165,362	+				-0.3
6,165,363	-				-0.0
6,165,409	+		PP_5406	0.13	+1.0
6,165,409	+		PP_5406	0.13	-2.1
6,165,410	-		PP_5406	0.14	+1.6
6,165,420	+		PP_5406	0.15	+1.8
6,165,421	-		PP_5406	0.15	-1.0
6,165,454	+		PP_5406	0.18	+0.4
6,165,455	-		PP_5406	0.18	+0.6
6,165,469	+		PP_5406	0.20	+0.4
6,165,470	-		PP_5406	0.20	+0.2
6,165,564	-		PP_5406	0.30	-0.0
6,165,579	+		PP_5406	0.31	+0.2
6,165,579	+		PP_5406	0.31	+5.5
6,165,593	+		PP_5406	0.33	+0.8
6,165,594	-		PP_5406	0.33	+1.2
6,165,594	-		PP_5406	0.33	+1.2
6,165,625	-		PP_5406	0.36	-0.6
6,165,625	-		PP_5406	0.36	+0.3
6,165,649	+		PP_5406	0.38	-1.7
6,165,649	+		PP_5406	0.38	+0.8
6,165,649	+		PP_5406	0.38	+0.3
6,165,649	+		PP_5406	0.38	-1.1
6,165,649	+		PP_5406	0.38	-0.3
6,165,650	-		PP_5406	0.39	+0.2
6,165,650	-		PP_5406	0.39	+0.7
6,165,652	+		PP_5406	0.39	+0.8
6,165,728	+		PP_5406	0.47	+1.7
6,165,728	+		PP_5406	0.47	+0.2
6,165,728	+				+0.2
6,165,729	-		PP_5406	0.47	-1.1
6,165,838	+		PP_5406	0.58	+0.3
6,166,039	+		PP_5406	0.79	+1.3
6,166,040	-		PP_5406	0.79	+0.5
6,166,040	-		PP_5406	0.79	-0.6
6,166,047	+		PP_5406	0.80	+0.4
6,166,047	+		PP_5406	0.80	-1.4
6,166,048	-		PP_5406	0.80	-0.6
6,166,048	-		PP_5406	0.80	-0.2
6,166,048	-		PP_5406	0.80	-0.9
6,166,110	-		PP_5406	0.86	-1.3
6,166,110	-		PP_5406	0.86	+0.6
6,166,110	-		PP_5406	0.86	-0.3
6,166,122	+		PP_5406	0.88	+3.1
6,166,122	+		PP_5406	0.88	-2.0
6,166,122	+		PP_5406	0.88	-0.1
6,166,123	-		PP_5406	0.88	+0.2
6,166,136	+		PP_5406	0.89	-0.8
6,166,136	+		PP_5406	0.89	+0.5
6,166,136	+		PP_5406	0.89	-0.3
6,166,136	+		PP_5406	0.89	-0.5
6,166,137	-		PP_5406	0.89	-0.6
6,166,137	-		PP_5406	0.89	+0.7
6,166,137	-		PP_5406	0.89	-1.4
6,166,137	-		PP_5406	0.89	+1.7
6,166,170	+				-1.5
6,166,170	+				-0.6
6,166,170	+				+1.1
6,166,170	+				+1.1
6,166,170	+				+0.4
6,166,170	+				-0.2
6,166,170	+				-1.7
6,166,170	+				+4.2
6,166,171	-				+0.6
6,166,171	-				-0.4
6,166,171	-				+0.7
6,166,171	-				+1.2
6,166,171	-				+0.3
6,166,171	-				+0.5
6,166,171	-				-0.7
6,166,174	+				-1.1
6,166,174	+				+0.2
6,166,174	+				+1.5
6,166,174	+				-0.2
6,166,174	+				-1.2
6,166,174	+				+0.0
6,166,174	+				+0.2
6,166,174	+				+0.6
6,166,175	-				+1.0
6,166,175	-				+0.4
6,166,175	-				-0.7
6,166,175	-				-0.2
6,166,175	-				-1.3
6,166,175	-				+2.6
6,166,175	-				-0.4
6,166,175	-				-0.5
6,166,175	-				-1.2
6,166,175	-				-0.9
6,166,175	-				+0.9
6,166,175	-				-0.0
6,166,175	-				-0.2
6,166,175	-				+0.8
6,166,175	-				+0.5
6,166,175	-				+1.2
6,166,262	-				+0.7
6,166,333	+				+0.6
6,166,334	-				-0.4
6,166,490	+				+1.4
6,166,491	-				-0.1
6,166,515	-				+0.6
6,166,518	+				+0.2
6,166,518	+				-1.0
6,166,518	+				-0.4
6,166,519	-				-0.8
6,166,543	+				-1.0
6,166,544	-				+1.5
6,166,544	-				-1.9
6,166,549	+				-0.7
6,166,550	-				-0.4
6,166,550	-				-1.2
6,166,550	-				-0.2
6,166,550	-				-0.2
6,166,555	-				+0.6
6,166,645	+				-1.2
6,166,707	+				-0.1
6,166,707	+				-0.6
6,166,707	+				-0.6
6,166,718	+				-0.1
6,166,718	+				-0.3
6,166,719	-				-1.3
6,166,719	-				-1.4
6,166,719	-				+2.7
6,166,728	+				-0.3
6,166,729	-				-2.5
6,166,745	+				+4.1
6,166,746	-				+0.7
6,166,746	-				-2.6
6,166,839	+				+0.1
6,166,875	+				-0.2
6,166,902	-				+0.1
6,166,916	-				+0.2
6,166,943	+				-1.2
6,166,985	+				-0.9
6,167,001	+				+1.6
6,167,026	-				-1.3
6,167,031	+				-1.6