Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4601 and PP_4602 overlap by 13 nucleotides PP_4602 and PP_4603 are separated by 378 nucleotides
PP_4601: PP_4601 - Transcriptional regulator, LysR family, at 5,220,875 to 5,221,762
_4601
PP_4602: PP_4602 - Transcriptional regulator, AraC family, at 5,221,750 to 5,222,589
_4602
PP_4603: PP_4603 - transposase, at 5,222,968 to 5,224,296
_4603
Position (kb) 5221
5222
5223 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5220.767 kb on + strand at 5220.767 kb on + strand at 5220.768 kb on - strand at 5220.768 kb on - strand at 5220.799 kb on - strand at 5220.826 kb on + strand at 5220.826 kb on + strand at 5220.827 kb on - strand at 5220.842 kb on + strand at 5220.843 kb on - strand at 5220.854 kb on - strand at 5220.952 kb on + strand at 5220.952 kb on + strand at 5220.952 kb on + strand at 5220.952 kb on + strand at 5220.953 kb on - strand at 5221.303 kb on + strand, within PP_4601 at 5221.304 kb on - strand, within PP_4601 at 5221.304 kb on - strand, within PP_4601 at 5221.311 kb on - strand, within PP_4601 at 5221.473 kb on - strand, within PP_4601 at 5221.556 kb on - strand, within PP_4601 at 5221.578 kb on + strand, within PP_4601 at 5221.578 kb on + strand, within PP_4601 at 5221.578 kb on + strand, within PP_4601 at 5221.578 kb on + strand, within PP_4601 at 5221.578 kb on + strand, within PP_4601 at 5221.579 kb on - strand, within PP_4601 at 5221.579 kb on - strand, within PP_4601 at 5221.579 kb on - strand, within PP_4601 at 5221.642 kb on - strand, within PP_4601 at 5221.782 kb on - strand at 5221.795 kb on - strand at 5221.844 kb on + strand, within PP_4602 at 5221.845 kb on - strand, within PP_4602 at 5221.964 kb on + strand, within PP_4602 at 5221.964 kb on + strand, within PP_4602 at 5221.964 kb on + strand, within PP_4602 at 5221.989 kb on + strand, within PP_4602 at 5222.075 kb on + strand, within PP_4602 at 5222.076 kb on - strand, within PP_4602 at 5222.154 kb on - strand, within PP_4602 at 5222.154 kb on - strand, within PP_4602 at 5222.201 kb on + strand, within PP_4602 at 5222.268 kb on + strand, within PP_4602 at 5222.269 kb on - strand, within PP_4602 at 5222.378 kb on + strand, within PP_4602 at 5222.504 kb on + strand, within PP_4602
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,220,767 + +0.2 5,220,767 + +0.3 5,220,768 - +0.3 5,220,768 - -1.2 5,220,799 - -0.0 5,220,826 + +0.3 5,220,826 + +1.1 5,220,827 - +1.4 5,220,842 + +0.4 5,220,843 - +0.0 5,220,854 - +0.4 5,220,952 + -0.6 5,220,952 + -1.8 5,220,952 + +1.0 5,220,952 + +0.1 5,220,953 - +1.1 5,221,303 + PP_4601 0.48 -0.7 5,221,304 - PP_4601 0.48 -1.6 5,221,304 - PP_4601 0.48 +1.0 5,221,311 - PP_4601 0.49 +0.4 5,221,473 - PP_4601 0.67 -1.0 5,221,556 - PP_4601 0.77 +0.6 5,221,578 + PP_4601 0.79 -1.0 5,221,578 + PP_4601 0.79 -0.8 5,221,578 + PP_4601 0.79 -0.2 5,221,578 + PP_4601 0.79 +2.3 5,221,578 + PP_4601 0.79 +0.6 5,221,579 - PP_4601 0.79 +1.0 5,221,579 - PP_4601 0.79 -0.7 5,221,579 - PP_4601 0.79 -1.4 5,221,642 - PP_4601 0.86 -0.1 5,221,782 - -0.7 5,221,795 - +0.1 5,221,844 + PP_4602 0.11 -0.6 5,221,845 - PP_4602 0.11 +1.4 5,221,964 + PP_4602 0.25 +4.3 5,221,964 + PP_4602 0.25 -2.3 5,221,964 + PP_4602 0.25 +0.3 5,221,989 + PP_4602 0.28 -0.1 5,222,075 + PP_4602 0.39 +0.9 5,222,076 - PP_4602 0.39 +1.3 5,222,154 - PP_4602 0.48 -0.3 5,222,154 - PP_4602 0.48 -0.1 5,222,201 + PP_4602 0.54 +1.0 5,222,268 + PP_4602 0.62 +0.2 5,222,269 - PP_4602 0.62 -0.2 5,222,378 + PP_4602 0.75 +0.0 5,222,504 + PP_4602 0.90 +0.7
Or see this region's nucleotide sequence