Strain Fitness in Pseudomonas putida KT2440 around PP_4243

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
4,817,272	-				+0.3
4,817,275	+				+0.0
4,817,579	+		PP_4242	0.34	+1.6
4,817,579	+		PP_4242	0.34	+0.8
4,817,634	-		PP_4242	0.41	+1.5
4,817,634	-		PP_4242	0.41	+0.6
4,817,646	+		PP_4242	0.43	-0.9
4,817,647	-		PP_4242	0.43	-1.1
4,817,651	-		PP_4242	0.44	+1.7
4,817,651	-		PP_4242	0.44	+0.5
4,817,681	+		PP_4242	0.47	+1.3
4,817,682	-		PP_4242	0.47	-2.0
4,817,706	+		PP_4242	0.50	-0.7
4,817,707	-		PP_4242	0.51	+2.2
4,817,770	-		PP_4242	0.58	+0.4
4,817,912	+		PP_4242	0.76	-0.9
4,817,913	-		PP_4242	0.76	+0.0
4,817,923	+		PP_4242	0.78	+0.1
4,817,973	-		PP_4242	0.84	-2.0
4,818,033	+				+0.4
4,818,045	-				-0.3
4,818,074	+				+0.7
4,818,075	-				-0.2
4,818,095	-				+0.9
4,818,098	-				-0.3
4,818,103	+				+0.1
4,818,317	+				-0.7
4,818,317	+				-0.4
4,818,317	+				+1.0
4,818,318	-				-0.4
4,818,318	-				-1.8
4,818,318	-				-0.5
4,818,318	-				-0.4
4,818,321	+				-1.6
4,818,321	+				+0.3
4,818,383	+				+0.7
4,818,383	+				+0.8
4,818,384	-				+1.2
4,818,496	+				-0.1
4,818,651	+				+0.6
4,818,651	+				-0.2
4,818,652	-				+0.9
4,818,652	-				+0.8
4,818,652	-				+1.0
4,818,735	+				+0.0
4,818,883	-				-1.4
4,818,925	+				-0.4
4,818,930	+				+1.4
4,818,931	-				+0.8
4,819,002	+				+1.3
4,819,002	+				-2.2
4,819,002	+				-0.5
4,819,013	+				-0.2
4,819,014	-				+0.5
4,819,086	+				-0.2
4,819,086	+				+1.0
4,819,086	+				+0.3
4,819,087	-				+0.2
4,819,125	+				-0.5
4,819,194	+				+0.0
4,819,194	+				+0.6
4,819,195	-				-0.1
4,819,414	+				+1.2
4,819,414	+				+1.4
4,819,414	+				-1.4
4,819,427	+				-1.1
4,819,428	-				-0.3
4,819,428	-				+0.1
4,819,530	+				-1.9
4,819,531	-				+0.1
4,819,614	+		PP_4243	0.11	-0.9
4,819,615	-		PP_4243	0.11	-0.5
4,819,623	+		PP_4243	0.11	-0.7
4,819,624	-		PP_4243	0.11	+0.3
4,819,999	-		PP_4243	0.14	+0.6
4,819,999	-		PP_4243	0.14	-1.4
4,820,005	-		PP_4243	0.14	+0.4
4,820,005	-		PP_4243	0.14	+0.1
4,820,005	-		PP_4243	0.14	+1.4
4,820,005	-		PP_4243	0.14	+0.2
4,820,005	-		PP_4243	0.14	+1.4
4,820,005	-		PP_4243	0.14	+1.0
4,820,076	+		PP_4243	0.14	-0.0
4,820,076	+		PP_4243	0.14	+0.8
4,820,076	+		PP_4243	0.14	+0.2
4,820,077	-		PP_4243	0.14	+0.9
4,820,077	-		PP_4243	0.14	-0.3
4,820,077	-		PP_4243	0.14	-0.3
4,820,189	+		PP_4243	0.15	-0.7
4,820,190	-		PP_4243	0.15	+0.4
4,820,190	-		PP_4243	0.15	-0.9
4,820,190	-		PP_4243	0.15	+1.0
4,820,332	+		PP_4243	0.16	+0.9
4,820,481	+		PP_4243	0.17	-0.1
4,820,481	+		PP_4243	0.17	+0.9
4,820,481	+		PP_4243	0.17	-1.7
4,820,482	-		PP_4243	0.17	+1.2
4,820,482	-		PP_4243	0.17	+0.2
4,820,488	-		PP_4243	0.17	-0.4
4,820,794	-				+0.6
4,820,943	+		PP_4243	0.21	-1.1
4,820,943	+		PP_4243	0.21	+0.9
4,820,944	-		PP_4243	0.21	+0.4
4,820,944	-		PP_4243	0.21	-0.4
4,821,084	+		PP_4243	0.22	+0.3
4,821,085	-		PP_4243	0.22	+1.6
4,821,226	-		PP_4243	0.23	+0.2
4,821,393	+		PP_4243	0.24	+1.4
4,821,393	+		PP_4243	0.24	-0.7
4,821,393	+		PP_4243	0.24	+1.0
4,821,393	+		PP_4243	0.24	+1.5
4,821,393	+		PP_4243	0.24	-1.9
4,821,394	-		PP_4243	0.24	-0.6
4,821,394	-		PP_4243	0.24	+0.7
4,821,396	+		PP_4243	0.24	+1.6
4,821,462	+		PP_4243	0.25	+0.9
4,821,643	-		PP_4243	0.26	-1.9
4,821,687	+		PP_4243	0.27	+2.4
4,821,687	+		PP_4243	0.27	+1.7
4,821,687	+		PP_4243	0.27	-2.4
4,821,688	-		PP_4243	0.27	+2.0
4,821,814	-		PP_4243	0.28	-1.3
4,821,814	-		PP_4243	0.28	+0.4
4,821,879	+		PP_4243	0.28	-1.4
4,821,880	-		PP_4243	0.28	+0.3
4,821,914	+		PP_4243	0.28	-0.1
4,821,915	-		PP_4243	0.28	+0.0
4,822,002	+		PP_4243	0.29	-0.6
4,822,165	-		PP_4243	0.30	-0.5
4,822,347	+		PP_4243	0.32	-0.7
4,822,347	+		PP_4243	0.32	-0.3
4,822,348	-		PP_4243	0.32	-1.1
4,822,348	-		PP_4243	0.32	+0.7
4,822,413	+		PP_4243	0.32	+0.3
4,822,414	-		PP_4243	0.32	+0.9
4,822,414	-		PP_4243	0.32	-0.2
4,822,575	+		PP_4243	0.33	+1.0
4,822,575	+		PP_4243	0.33	+0.4
4,822,576	-		PP_4243	0.34	-0.6
4,822,576	-		PP_4243	0.34	+0.4
4,822,576	-		PP_4243	0.34	-1.9
4,822,647	+		PP_4243	0.34	-0.6
4,822,647	+		PP_4243	0.34	+0.3
4,822,647	+		PP_4243	0.34	+0.1
4,822,647	+		PP_4243	0.34	-2.1
4,822,647	+		PP_4243	0.34	-1.5
4,822,648	-		PP_4243	0.34	+2.9
4,823,115	+		PP_4243	0.38	+0.1
4,823,116	-		PP_4243	0.38	+2.5
4,823,226	+		PP_4243	0.39	+1.9
4,823,227	-				+1.0
4,823,227	-		PP_4243	0.39	+7.2
4,823,227	-		PP_4243	0.39	-1.0
4,823,227	-		PP_4243	0.39	-0.4
4,823,390	+		PP_4243	0.40	-0.4
4,823,466	+		PP_4243	0.40	+0.1
4,823,496	-		PP_4243	0.41	-0.6
4,823,515	-		PP_4243	0.41	-1.3
4,823,616	+		PP_4243	0.42	+0.8
4,823,616	+		PP_4243	0.42	+0.6
4,823,670	+		PP_4243	0.42	-1.4
4,823,670	+		PP_4243	0.42	-1.3
4,823,925	+		PP_4243	0.44	+0.2
4,823,926	-		PP_4243	0.44	+0.1
4,824,014	+		PP_4243	0.45	-0.6
4,824,081	+		PP_4243	0.45	+1.3
4,824,204	+		PP_4243	0.46	-0.0
4,824,204	+		PP_4243	0.46	-0.2
4,824,204	+		PP_4243	0.46	-0.5
4,824,213	+		PP_4243	0.46	+0.7
4,824,214	-		PP_4243	0.46	+0.6
4,824,261	+		PP_4243	0.47	-0.2
4,824,262	-		PP_4243	0.47	+0.1
4,824,388	-		PP_4243	0.47	+0.4
4,824,425	+		PP_4243	0.48	-1.3
4,824,425	+		PP_4243	0.48	+1.2
4,824,429	+		PP_4243	0.48	-0.2
4,824,430	-		PP_4243	0.48	+0.0
4,824,430	-		PP_4243	0.48	-0.3
4,824,430	-		PP_4243	0.48	-0.8
4,824,430	-		PP_4243	0.48	+0.5
4,824,700	+		PP_4243	0.50	+0.5
4,824,700	+		PP_4243	0.50	+0.9
4,824,701	-		PP_4243	0.50	+0.7
4,824,701	-		PP_4243	0.50	-0.8
4,824,701	-		PP_4243	0.50	-0.3
4,824,701	-		PP_4243	0.50	-0.1
4,824,701	-		PP_4243	0.50	-1.2
4,824,840	+		PP_4243	0.51	-0.2
4,824,840	+		PP_4243	0.51	-2.8
4,824,841	-		PP_4243	0.51	+0.3
4,824,888	+				+0.6
4,824,928	-		PP_4243	0.52	+1.0
4,824,928	-		PP_4243	0.52	-0.5
4,824,928	-		PP_4243	0.52	+0.3
4,825,011	+		PP_4243	0.52	+1.8
4,825,011	+		PP_4243	0.52	+0.0
4,825,012	-		PP_4243	0.52	+0.0
4,825,043	+		PP_4243	0.53	+0.2
4,825,043	+		PP_4243	0.53	-0.6
4,825,044	-		PP_4243	0.53	-0.2
4,825,044	-		PP_4243	0.53	+1.0
4,825,251	+		PP_4243	0.54	+0.4
4,825,251	+		PP_4243	0.54	-2.0
4,825,252	-		PP_4243	0.54	-2.3
4,825,315	+		PP_4243	0.55	+1.0
4,825,366	-		PP_4243	0.55	-1.0
4,825,366	-		PP_4243	0.55	+0.1
4,825,366	-		PP_4243	0.55	+0.7
4,825,459	-		PP_4243	0.56	+0.1
4,825,459	-		PP_4243	0.56	-1.2
4,825,515	+		PP_4243	0.56	+0.8
4,825,516	-		PP_4243	0.56	-0.3
4,825,516	-		PP_4243	0.56	+0.3
4,825,525	-		PP_4243	0.56	-0.7
4,825,578	+		PP_4243	0.57	+0.9
4,825,578	+		PP_4243	0.57	-0.2
4,825,579	-		PP_4243	0.57	+0.6
4,825,840	-		PP_4243	0.59	+0.7
4,825,969	-		PP_4243	0.60	-0.7
4,825,969	-		PP_4243	0.60	-2.1
4,826,430	+		PP_4243	0.63	-1.1
4,826,430	+		PP_4243	0.63	-0.4
4,826,430	+		PP_4243	0.63	+1.3
4,826,431	-		PP_4243	0.63	+0.8
4,826,431	-		PP_4243	0.63	-2.4
4,826,431	-		PP_4243	0.63	+1.5
4,826,454	-		PP_4243	0.63	-0.3
4,826,454	-		PP_4243	0.63	+1.0
4,826,490	+		PP_4243	0.64	+0.6
4,826,490	+		PP_4243	0.64	-0.2
4,826,490	+		PP_4243	0.64	+9.7
4,826,493	+		PP_4243	0.64	+0.8
4,826,494	-		PP_4243	0.64	+1.4
4,826,529	-		PP_4243	0.64	-0.1
4,826,641	-		PP_4243	0.65	+0.8
4,826,692	-		PP_4243	0.65	-0.1
4,826,723	+		PP_4243	0.66	-0.6
4,826,724	-		PP_4243	0.66	-0.1
4,826,760	+		PP_4243	0.66	+0.1
4,826,760	+		PP_4243	0.66	-0.4
4,826,761	-		PP_4243	0.66	+0.5
4,826,791	-		PP_4243	0.66	-0.8
4,826,791	-		PP_4243	0.66	+1.6
4,826,791	-		PP_4243	0.66	-0.3
4,827,043	+		PP_4243	0.68	-0.1
4,827,044	-		PP_4243	0.68	+0.3
4,827,109	+		PP_4243	0.68	+0.4
4,827,110	-		PP_4243	0.69	+0.7
4,827,110	-		PP_4243	0.69	+0.7
4,827,110	-		PP_4243	0.69	-0.2
4,827,110	-		PP_4243	0.69	-0.2
4,827,110	-		PP_4243	0.69	+1.0
4,827,110	-		PP_4243	0.69	-2.5
4,827,120	+		PP_4243	0.69	+0.0
4,827,121	-		PP_4243	0.69	-0.1
4,827,121	-		PP_4243	0.69	+1.8
4,827,121	-		PP_4243	0.69	+3.7
4,827,143	-		PP_4243	0.69	+1.6
4,827,282	+		PP_4243	0.70	-0.9
4,827,282	+		PP_4243	0.70	+0.2
4,827,283	-		PP_4243	0.70	-0.7
4,827,283	-		PP_4243	0.70	-0.2
4,827,335	+		PP_4243	0.70	+0.5
4,827,367	+		PP_4243	0.70	+1.1
4,827,367	+		PP_4243	0.70	+3.2
4,827,367	+		PP_4243	0.70	-0.8
4,827,368	-		PP_4243	0.70	+1.1
4,827,369	+		PP_4243	0.71	+0.0
4,827,369	+		PP_4243	0.71	+1.5
4,827,369	+		PP_4243	0.71	-1.9
4,827,369	+		PP_4243	0.71	-0.4
4,827,370	-		PP_4243	0.71	+1.5
4,827,370	-		PP_4243	0.71	+1.0
4,827,370	-		PP_4243	0.71	+0.1
4,827,373	+		PP_4243	0.71	+0.4
4,827,373	+		PP_4243	0.71	+1.3
4,827,373	+		PP_4243	0.71	-0.6
4,827,373	+		PP_4243	0.71	+1.0
4,827,373	+		PP_4243	0.71	-0.4
4,827,374	-		PP_4243	0.71	+0.6
4,827,374	-		PP_4243	0.71	+0.2
4,827,374	-		PP_4243	0.71	-0.1
4,827,374	-		PP_4243	0.71	+1.0
4,827,374	-		PP_4243	0.71	-0.4
4,827,374	-		PP_4243	0.71	+0.6
4,827,374	-		PP_4243	0.71	-0.7
4,827,378	+		PP_4243	0.71	+0.7
4,827,378	+		PP_4243	0.71	+0.5
4,827,378	+		PP_4243	0.71	-0.3
4,827,379	-		PP_4243	0.71	+0.4
4,827,379	-		PP_4243	0.71	-0.2
4,827,512	+		PP_4243	0.72	+0.4
4,827,512	+		PP_4243	0.72	+6.1
4,827,512	+		PP_4243	0.72	+0.3
4,827,512	+		PP_4243	0.72	-1.2
4,827,543	+		PP_4243	0.72	+1.1
4,827,543	+		PP_4243	0.72	-1.1
4,827,544	-		PP_4243	0.72	+0.8
4,827,544	-		PP_4243	0.72	+1.2
4,827,544	-		PP_4243	0.72	+1.3
4,827,585	+		PP_4243	0.72	+1.6
4,827,585	+		PP_4243	0.72	+0.3
4,827,586	-		PP_4243	0.72	-0.9
4,827,694	-		PP_4243	0.73	-0.1
4,827,694	-		PP_4243	0.73	-1.3
4,827,694	-		PP_4243	0.73	-0.3
4,827,785	+		PP_4243	0.74	+0.7
4,827,785	+		PP_4243	0.74	+1.6
4,827,785	+		PP_4243	0.74	-0.2
4,827,994	-		PP_4243	0.75	+2.0
4,828,247	+		PP_4243	0.77	+1.3
4,828,309	+		PP_4243	0.78	-0.4
4,828,309	+				+2.6
4,828,309	+		PP_4243	0.78	+1.4
4,828,310	-		PP_4243	0.78	+1.0
4,828,310	-		PP_4243	0.78	-0.1
4,828,399	-		PP_4243	0.78	-0.0
4,828,606	-		PP_4243	0.80	-2.0
4,828,662	+		PP_4243	0.80	+0.6
4,828,725	+		PP_4243	0.81	+0.8
4,828,725	+		PP_4243	0.81	+1.4
4,828,725	+		PP_4243	0.81	-2.0
4,828,726	-		PP_4243	0.81	+0.0
4,828,966	+		PP_4243	0.83	-0.2
4,828,967	-		PP_4243	0.83	+0.2
4,829,103	+		PP_4243	0.84	-0.9
4,829,103	+		PP_4243	0.84	-0.9
4,829,104	-		PP_4243	0.84	+1.2
4,829,393	+		PP_4243	0.86	+0.2
4,829,393	+		PP_4243	0.86	+0.3
4,829,394	-		PP_4243	0.86	-0.8
4,829,493	+		PP_4243	0.87	-1.0
4,829,493	+		PP_4243	0.87	+4.4
4,829,494	-		PP_4243	0.87	-0.2
4,829,494	-		PP_4243	0.87	-0.8
4,829,806	-		PP_4243	0.89	-1.2
4,830,154	+				-0.1
4,830,208	-				-2.0
4,830,303	+				-0.9
4,830,412	-				-2.7
4,830,534	+				+0.5
4,830,534	+				-1.9
4,830,535	-				+0.3
4,830,673	-				-0.3
4,830,673	-				+0.1
4,830,906	+				-0.6
4,830,933	+				-0.2
4,830,934	-				-0.8
4,830,934	-				+0.2
4,830,960	+				+0.3
4,830,960	+				-0.6
4,831,214	+				+5.6
4,831,214	+				-0.1
4,831,236	-				-0.5
4,831,253	+				+1.2
4,831,253	+				+2.6
4,831,254	-				+1.2
4,831,254	-				+0.0
4,831,269	+				+1.0
4,831,269	+				+0.3
4,831,269	+				+0.0
4,831,269	+				-0.6
4,831,270	-				-0.2
4,831,270	-				-0.6
4,831,270	-				-1.1
4,831,270	-				+1.2
4,831,270	-				-1.2
4,831,322	-				-1.2
4,831,322	-				-1.9
4,831,322	-				-1.0
4,831,331	+				+0.2
4,831,338	+				-0.6
4,831,362	-				+2.6
4,831,422	+				-0.8
4,831,422	+				-0.6
4,831,439	+				+1.9
4,831,439	+				+0.0
4,831,440	-				+0.1
4,831,508	+				-0.3
4,831,509	-				+1.0
4,831,509	-				+0.1
4,831,518	+				-0.5
4,831,518	+				-0.1
4,831,518	+				+0.1
4,831,536	-				-0.3
4,831,536	-				-1.1
4,831,536	-				-0.2
4,831,622	+		PP_4244	0.24	-0.4
4,831,622	+		PP_4244	0.24	-0.1
4,831,623	-		PP_4244	0.24	+0.6
4,831,623	-		PP_4244	0.24	+0.7
4,831,691	-		PP_4244	0.37	-0.3
4,831,691	-		PP_4244	0.37	+0.9
4,831,730	+		PP_4244	0.44	+0.3
4,831,730	-		PP_4244	0.44	-2.0
4,831,756	+		PP_4244	0.49	-0.3
4,831,757	-		PP_4244	0.49	+1.9
4,831,757	-		PP_4244	0.49	-0.8
4,831,886	-		PP_4244	0.74	-0.5
4,831,886	-		PP_4244	0.74	-0.6
4,831,900	+		PP_4244	0.76	+1.0
4,831,901	-		PP_4244	0.76	+1.3
4,831,908	+		PP_4244	0.78	+0.3
4,831,909	-		PP_4244	0.78	+0.1
4,831,909	-		PP_4244	0.78	-0.7
4,831,909	-		PP_4244	0.78	+0.7
4,832,087	-				-0.9
4,832,087	-				-1.5
4,832,087	-				+0.4
4,832,087	-				+0.4
4,832,089	+				+0.2
4,832,090	-				+0.3
4,832,105	+				+0.0
4,832,143	+				-0.9
4,832,144	-				-0.3
4,832,152	+				+0.7
4,832,153	-				-0.2
4,832,153	-				+0.4
4,832,171	+				-1.4
4,832,172	-				-1.3
4,832,172	-				-0.9