Strain Fitness in Pseudomonas putida KT2440 around PP_3612

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
4,102,631	+				-0.1
4,102,698	+				-2.8
4,102,698	+				+0.1
4,102,699	-				-0.4
4,102,699	-				-1.3
4,102,847	-		PP_3611	0.31	-0.5
4,102,847	-		PP_3611	0.31	+0.1
4,102,962	+		PP_3611	0.51	-0.2
4,102,962	+		PP_3611	0.51	-1.3
4,102,962	+		PP_3611	0.51	+0.0
4,102,963	-		PP_3611	0.51	-0.2
4,102,963	-		PP_3611	0.51	-1.3
4,102,963	-		PP_3611	0.51	+0.1
4,102,983	+		PP_3611	0.55	+1.1
4,102,983	+		PP_3611	0.55	+1.8
4,102,983	+		PP_3611	0.55	+0.8
4,102,983	+		PP_3611	0.55	+0.3
4,102,983	+		PP_3611	0.55	+0.2
4,102,983	+		PP_3611	0.55	-0.1
4,102,983	+		PP_3611	0.55	-0.8
4,102,984	-		PP_3611	0.55	-0.1
4,102,984	-		PP_3611	0.55	-1.0
4,102,984	-		PP_3611	0.55	-0.6
4,103,008	+		PP_3611	0.59	-0.4
4,103,008	+		PP_3611	0.59	-0.8
4,103,115	-		PP_3611	0.77	-0.7
4,103,162	-		PP_3611	0.86	+1.0
4,103,174	+		PP_3611	0.88	+0.0
4,103,174	+		PP_3611	0.88	-0.1
4,103,213	+				+0.5
4,103,213	+				-0.6
4,103,214	-				-0.9
4,103,231	-				-1.2
4,103,231	-				-0.5
4,103,245	+				-1.8
4,103,246	-				-0.5
4,103,308	+				-0.4
4,103,309	-				-0.8
4,103,309	-				+0.5
4,103,557	+				-2.2
4,103,662	+				-0.1
4,103,825	+		PP_3612	0.17	-1.1
4,103,825	+		PP_3612	0.17	+1.4
4,103,825	+		PP_3612	0.17	+0.4
4,103,826	-		PP_3612	0.17	-0.1
4,103,826	-		PP_3612	0.17	+1.6
4,103,826	-		PP_3612	0.17	-1.3
4,103,826	-		PP_3612	0.17	-2.4
4,103,826	-		PP_3612	0.17	-0.6
4,103,829	+		PP_3612	0.17	-1.6
4,103,830	-		PP_3612	0.17	+5.8
4,103,855	+		PP_3612	0.18	-1.0
4,103,856	-		PP_3612	0.18	-0.1
4,103,856	-		PP_3612	0.18	+5.2
4,103,856	-		PP_3612	0.18	+0.2
4,103,918	+		PP_3612	0.21	-0.4
4,103,919	-		PP_3612	0.21	-0.5
4,104,122	+		PP_3612	0.31	-0.2
4,104,122	+		PP_3612	0.31	+0.5
4,104,122	+		PP_3612	0.31	+1.1
4,104,123	-		PP_3612	0.31	+0.2
4,104,155	+		PP_3612	0.32	-1.3
4,104,155	+		PP_3612	0.32	+1.1
4,104,156	-		PP_3612	0.33	-0.3
4,104,200	+		PP_3612	0.35	-0.2
4,104,201	-		PP_3612	0.35	-1.2
4,104,201	-		PP_3612	0.35	-1.2
4,104,207	-		PP_3612	0.35	-0.1
4,104,309	-		PP_3612	0.40	-0.3
4,104,334	+		PP_3612	0.41	-1.2
4,104,334	+		PP_3612	0.41	+0.4
4,104,334	+		PP_3612	0.41	-0.7
4,104,334	+		PP_3612	0.41	-1.5
4,104,350	+		PP_3612	0.42	-0.4
4,104,393	-		PP_3612	0.44	-1.8
4,104,395	+		PP_3612	0.44	-0.0
4,104,396	-		PP_3612	0.44	-1.2
4,104,396	-		PP_3612	0.44	+0.1
4,104,402	-		PP_3612	0.44	-0.3
4,104,515	+		PP_3612	0.49	-1.0
4,104,515	+		PP_3612	0.49	-1.2
4,104,614	+		PP_3612	0.54	-1.4
4,104,614	+		PP_3612	0.54	-0.3
4,104,615	-		PP_3612	0.54	-0.2
4,104,615	-		PP_3612	0.54	-0.2
4,104,659	+		PP_3612	0.56	-0.7
4,104,659	+		PP_3612	0.56	+0.3
4,104,659	+		PP_3612	0.56	+2.6
4,104,659	+		PP_3612	0.56	+0.1
4,104,800	+		PP_3612	0.63	-0.1
4,104,800	+		PP_3612	0.63	-2.1
4,104,801	-		PP_3612	0.63	+0.2
4,104,821	+		PP_3612	0.64	+0.9
4,104,821	+		PP_3612	0.64	-0.6
4,104,822	-		PP_3612	0.64	-0.3
4,104,896	+		PP_3612	0.67	+1.6
4,104,923	+		PP_3612	0.68	-0.2
4,104,923	+		PP_3612	0.68	+0.8
4,104,923	+		PP_3612	0.68	+1.5
4,104,923	+		PP_3612	0.68	+0.2
4,104,923	+		PP_3612	0.68	-1.8
4,104,923	+		PP_3612	0.68	-0.6
4,104,924	-		PP_3612	0.69	+2.5
4,104,924	-		PP_3612	0.69	-0.5
4,104,924	-		PP_3612	0.69	-1.4
4,104,924	-		PP_3612	0.69	+0.3
4,104,924	-		PP_3612	0.69	-0.9
4,104,924	-		PP_3612	0.69	-0.1
4,104,924	-		PP_3612	0.69	+0.8
4,104,944	+		PP_3612	0.69	-0.5
4,104,944	+		PP_3612	0.69	-0.6
4,104,944	+		PP_3612	0.69	+2.9
4,104,945	-		PP_3612	0.70	+4.6
4,105,016	+		PP_3612	0.73	+0.6
4,105,135	-		PP_3612	0.78	+0.7
4,105,153	+		PP_3612	0.79	+0.9
4,105,208	+		PP_3612	0.82	+1.8
4,105,208	+		PP_3612	0.82	+0.1
4,105,209	-		PP_3612	0.82	+1.2
4,105,209	-				-0.1
4,105,209	-		PP_3612	0.82	+0.8
4,105,209	-		PP_3612	0.82	+1.0
4,105,217	+		PP_3612	0.82	-0.3
4,105,218	-		PP_3612	0.82	-0.2
4,105,223	+		PP_3612	0.83	-0.5
4,105,224	-		PP_3612	0.83	-0.2
4,105,224	-		PP_3612	0.83	-1.5
4,105,224	-		PP_3612	0.83	+0.8
4,105,224	-		PP_3612	0.83	+0.5
4,105,329	+		PP_3612	0.88	-1.3
4,105,329	+		PP_3612	0.88	-1.2
4,105,329	+		PP_3612	0.88	-0.8
4,105,329	+		PP_3612	0.88	+1.5
4,105,329	+		PP_3612	0.88	-1.0
4,105,329	+		PP_3612	0.88	+0.9
4,105,373	+		PP_3612	0.90	-0.1
4,105,373	+		PP_3612	0.90	-0.4
4,105,424	+				+0.1
4,105,424	+				-0.5
4,105,424	+				+1.1
4,105,425	-				+0.5
4,105,425	-				-1.1
4,105,425	-				+1.3
4,105,425	-				-0.6
4,105,427	-				+0.4
4,105,451	+				+2.4
4,105,451	+				+0.3
4,105,508	+				+0.6
4,105,508	+				-1.5
4,105,509	-				+1.0
4,105,511	+				+0.0
4,105,511	+				-0.6
4,105,511	+				-0.8
4,105,583	+				+0.7
4,105,584	-				-0.4
4,105,674	-				-1.2
4,105,687	+				+0.8
4,105,688	-				-1.9
4,105,708	+				+0.5
4,105,708	+				-0.4
4,105,709	-				+0.8
4,105,869	+		PP_3613	0.15	+0.5
4,105,870	-		PP_3613	0.15	+0.2
4,105,870	-		PP_3613	0.15	+0.1
4,105,870	-		PP_3613	0.15	-1.4
4,105,995	+		PP_3613	0.24	+0.4
4,105,995	+		PP_3613	0.24	+0.9
4,105,995	+		PP_3613	0.24	-2.1
4,106,070	+		PP_3613	0.30	+2.3
4,106,071	-		PP_3613	0.30	+1.4
4,106,071	-		PP_3613	0.30	-2.5
4,106,076	+		PP_3613	0.31	-0.8
4,106,077	-		PP_3613	0.31	-0.9
4,106,088	+		PP_3613	0.32	+0.5
4,106,088	+		PP_3613	0.32	-1.4
4,106,088	+		PP_3613	0.32	-0.4
4,106,088	+		PP_3613	0.32	-1.1
4,106,088	+		PP_3613	0.32	-1.8
4,106,088	+		PP_3613	0.32	-0.3
4,106,088	+		PP_3613	0.32	-0.2
4,106,088	+		PP_3613	0.32	-0.2
4,106,089	-		PP_3613	0.32	+0.3
4,106,089	-		PP_3613	0.32	+1.0
4,106,089	-		PP_3613	0.32	+4.3
4,106,089	-		PP_3613	0.32	+0.0
4,106,089	-		PP_3613	0.32	-1.5
4,106,089	-		PP_3613	0.32	-1.5
4,106,089	-		PP_3613	0.32	-0.2
4,106,089	-		PP_3613	0.32	-0.6
4,106,106	-		PP_3613	0.33	+0.9
4,106,106	-		PP_3613	0.33	+0.1
4,106,212	+		PP_3613	0.41	+0.1
4,106,337	+		PP_3613	0.51	+0.2
4,106,337	+		PP_3613	0.51	-1.5
4,106,337	+		PP_3613	0.51	-1.2
4,106,338	-		PP_3613	0.51	+1.8
4,106,338	-		PP_3613	0.51	-1.1
4,106,338	-		PP_3613	0.51	-0.6
4,106,338	-		PP_3613	0.51	-0.1
4,106,338	-		PP_3613	0.51	-0.3
4,106,486	+		PP_3613	0.62	+0.9
4,106,486	+		PP_3613	0.62	+1.0
4,106,486	+		PP_3613	0.62	+0.7
4,106,487	-		PP_3613	0.62	+0.1
4,106,487	-		PP_3613	0.62	+0.3
4,106,490	+		PP_3613	0.63	-0.5
4,106,490	+		PP_3613	0.63	-0.9
4,106,491	-		PP_3613	0.63	+0.7
4,106,491	-		PP_3613	0.63	+0.3
4,106,491	-		PP_3613	0.63	+1.2
4,106,508	+		PP_3613	0.64	-1.6
4,106,555	+		PP_3613	0.68	-0.5
4,106,556	-		PP_3613	0.68	-0.1
4,106,556	-		PP_3613	0.68	-1.4
4,106,562	+		PP_3613	0.68	-0.4
4,106,562	+		PP_3613	0.68	+0.1
4,106,562	+		PP_3613	0.68	-0.3
4,106,563	-		PP_3613	0.68	+0.0