Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0629 and PP_0630 are separated by 111 nucleotides PP_0630 and PP_0631 overlap by 4 nucleotides PP_0631 and PP_0632 overlap by 1 nucleotides PP_0632 and PP_0633 are separated by 2 nucleotides
PP_0629: PP_0629 - conserved membrane protein of unknown function, at 736,910 to 737,617
_0629
PP_0630: PP_0630 - DNA gyrase inhibitor YacG, at 737,729 to 737,929
_0630
PP_0631: PP_0631 - Dephospho-CoA kinase, at 737,926 to 738,549
_0631
PP_0632: PP_0632 - leader peptidase/N-methyltransferase, at 738,549 to 739,415
_0632
PP_0633: PP_0633 - Type 4 fimbrial assembly protein PilC, at 739,418 to 740,626
_0633
Position (kb) 738
739
740 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 737.582 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.757 kb on + strand, within PP_0630 at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.581 kb on - strand at 738.583 kb on - strand at 738.583 kb on - strand at 738.628 kb on + strand at 738.628 kb on + strand at 738.628 kb on + strand at 738.829 kb on + strand, within PP_0632 at 738.829 kb on + strand, within PP_0632 at 739.056 kb on + strand, within PP_0632 at 739.056 kb on + strand, within PP_0632 at 739.057 kb on - strand, within PP_0632 at 739.150 kb on + strand, within PP_0632 at 739.263 kb on + strand, within PP_0632 at 739.264 kb on - strand, within PP_0632 at 739.264 kb on - strand at 739.264 kb on - strand, within PP_0632 at 739.264 kb on - strand, within PP_0632 at 739.332 kb on - strand at 739.332 kb on - strand at 739.378 kb on + strand at 739.378 kb on + strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.379 kb on - strand at 739.407 kb on + strand at 739.429 kb on + strand at 739.429 kb on + strand at 739.430 kb on - strand at 739.430 kb on - strand at 739.430 kb on - strand at 739.452 kb on + strand at 739.453 kb on - strand at 739.453 kb on - strand at 739.789 kb on - strand, within PP_0633 at 739.908 kb on + strand, within PP_0633 at 740.119 kb on - strand at 740.225 kb on + strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.239 kb on - strand, within PP_0633 at 740.239 kb on - strand, within PP_0633
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 737,582 + +0.1 737,714 + +0.1 737,714 + -0.6 737,714 + -0.2 737,714 + +1.6 737,715 - -0.3 737,715 - -0.7 737,715 - -0.2 737,757 + PP_0630 0.14 -0.0 738,572 - -0.5 738,572 - +6.4 738,572 - -0.4 738,572 - +0.1 738,581 - +0.6 738,583 - -2.7 738,583 - -1.1 738,628 + +0.7 738,628 + -1.5 738,628 + +0.3 738,829 + PP_0632 0.32 +0.3 738,829 + PP_0632 0.32 +0.3 739,056 + PP_0632 0.58 +0.4 739,056 + PP_0632 0.58 -2.2 739,057 - PP_0632 0.59 +4.4 739,150 + PP_0632 0.69 -2.2 739,263 + PP_0632 0.82 +0.9 739,264 - PP_0632 0.82 +2.0 739,264 - +1.0 739,264 - PP_0632 0.82 +1.8 739,264 - PP_0632 0.82 +0.4 739,332 - -1.8 739,332 - +0.8 739,378 + -0.2 739,378 + -1.8 739,379 - -0.4 739,379 - +0.1 739,379 - -0.7 739,379 - -0.0 739,379 - -0.7 739,379 - -2.6 739,407 + +3.9 739,429 + -0.1 739,429 + +0.9 739,430 - -0.8 739,430 - +0.8 739,430 - +3.3 739,452 + +1.1 739,453 - -1.6 739,453 - +1.6 739,789 - PP_0633 0.31 -0.7 739,908 + PP_0633 0.41 +1.0 740,119 - -0.0 740,225 + PP_0633 0.67 -0.9 740,239 - PP_0633 0.68 -0.1 740,239 - PP_0633 0.68 -1.4 740,239 - PP_0633 0.68 +0.4 740,239 - PP_0633 0.68 -0.9
Or see this region's nucleotide sequence