Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0486 and PP_0487 are separated by 146 nucleotides PP_0487 and PP_0488 are separated by 21 nucleotides PP_0488 and PP_0489 are separated by 147 nucleotides
PP_0486: PP_0486 - Transcriptional regulator, GntR family, at 571,665 to 573,089
_0486
PP_0487: PP_0487 - conserved membrane protein of unknown function, at 573,236 to 574,033
_0487
PP_0488: PP_0488 - putative NADP-dependent dehydrogenase HI_1430, at 574,055 to 574,816
_0488
PP_0489: PP_0489 - formate dehydrogenase-O major subunit, at 574,964 to 578,032
_0489
Position (kb) 574
575 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 573.084 kb on + strand at 573.085 kb on - strand at 573.107 kb on + strand at 573.108 kb on - strand at 573.108 kb on - strand at 573.108 kb on - strand at 573.108 kb on - strand at 573.116 kb on + strand at 573.117 kb on - strand at 573.140 kb on + strand at 573.145 kb on + strand at 573.173 kb on + strand at 573.223 kb on - strand at 573.223 kb on - strand at 573.223 kb on - strand at 573.248 kb on - strand at 573.267 kb on - strand at 573.267 kb on - strand at 573.267 kb on - strand at 573.300 kb on + strand at 573.300 kb on + strand at 573.301 kb on - strand at 573.301 kb on - strand at 573.301 kb on - strand at 573.495 kb on + strand, within PP_0487 at 573.495 kb on + strand, within PP_0487 at 573.496 kb on - strand, within PP_0487 at 573.526 kb on - strand, within PP_0487 at 573.533 kb on + strand, within PP_0487 at 573.534 kb on - strand, within PP_0487 at 573.610 kb on + strand, within PP_0487 at 573.716 kb on + strand, within PP_0487 at 573.716 kb on + strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.717 kb on - strand, within PP_0487 at 573.770 kb on + strand, within PP_0487 at 573.770 kb on + strand, within PP_0487 at 573.878 kb on + strand, within PP_0487 at 573.878 kb on + strand, within PP_0487 at 573.878 kb on + strand, within PP_0487 at 573.879 kb on - strand, within PP_0487 at 574.043 kb on - strand at 574.043 kb on - strand at 574.043 kb on - strand at 574.071 kb on + strand at 574.195 kb on - strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.472 kb on + strand, within PP_0488 at 574.473 kb on - strand, within PP_0488 at 574.473 kb on - strand, within PP_0488 at 574.496 kb on + strand, within PP_0488 at 574.496 kb on + strand, within PP_0488 at 574.497 kb on - strand, within PP_0488 at 574.658 kb on + strand, within PP_0488 at 574.659 kb on - strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.668 kb on + strand, within PP_0488 at 574.669 kb on - strand, within PP_0488 at 574.669 kb on - strand, within PP_0488 at 574.669 kb on - strand, within PP_0488 at 574.669 kb on - strand, within PP_0488 at 574.738 kb on + strand, within PP_0488 at 574.739 kb on - strand, within PP_0488 at 574.744 kb on + strand at 574.744 kb on + strand at 574.744 kb on + strand at 574.745 kb on - strand at 574.745 kb on - strand at 574.745 kb on - strand at 574.866 kb on + strand at 575.120 kb on + strand at 575.197 kb on + strand at 575.198 kb on - strand at 575.489 kb on + strand, within PP_0489 at 575.490 kb on - strand, within PP_0489 at 575.588 kb on + strand, within PP_0489 at 575.588 kb on + strand, within PP_0489 at 575.588 kb on + strand, within PP_0489 at 575.777 kb on + strand, within PP_0489 at 575.777 kb on + strand, within PP_0489 at 575.777 kb on + strand, within PP_0489 at 575.780 kb on + strand, within PP_0489 at 575.781 kb on - strand, within PP_0489 at 575.781 kb on - strand, within PP_0489 at 575.781 kb on - strand, within PP_0489
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 573,084 + +2.1 573,085 - +0.0 573,107 + -0.4 573,108 - -0.3 573,108 - -0.5 573,108 - -0.9 573,108 - +3.6 573,116 + +1.0 573,117 - +1.5 573,140 + +1.9 573,145 + +0.8 573,173 + +0.6 573,223 - +1.0 573,223 - +0.7 573,223 - +0.5 573,248 - -0.7 573,267 - -0.4 573,267 - -0.1 573,267 - -1.1 573,300 + -0.7 573,300 + -0.4 573,301 - +0.4 573,301 - +0.0 573,301 - -1.9 573,495 + PP_0487 0.32 -0.0 573,495 + PP_0487 0.32 +1.0 573,496 - PP_0487 0.33 +1.6 573,526 - PP_0487 0.36 +0.2 573,533 + PP_0487 0.37 +0.3 573,534 - PP_0487 0.37 +0.0 573,610 + PP_0487 0.47 -2.4 573,716 + PP_0487 0.60 +0.1 573,716 + PP_0487 0.60 -0.3 573,717 - PP_0487 0.60 +2.7 573,717 - PP_0487 0.60 -1.3 573,717 - PP_0487 0.60 +0.6 573,717 - PP_0487 0.60 +0.2 573,770 + PP_0487 0.67 +0.4 573,770 + PP_0487 0.67 -0.4 573,878 + PP_0487 0.80 -0.4 573,878 + PP_0487 0.80 +0.3 573,878 + PP_0487 0.80 +1.2 573,879 - PP_0487 0.81 +0.6 574,043 - -1.1 574,043 - -0.4 574,043 - -0.8 574,071 + -0.2 574,195 - PP_0488 0.18 +0.6 574,472 + PP_0488 0.55 -2.5 574,472 + PP_0488 0.55 +0.5 574,472 + PP_0488 0.55 +0.6 574,472 + PP_0488 0.55 -1.0 574,472 + PP_0488 0.55 -0.7 574,472 + PP_0488 0.55 +0.3 574,473 - PP_0488 0.55 +2.1 574,473 - PP_0488 0.55 -0.7 574,496 + PP_0488 0.58 +11.0 574,496 + PP_0488 0.58 -0.2 574,497 - PP_0488 0.58 +0.1 574,658 + PP_0488 0.79 -0.7 574,659 - PP_0488 0.79 -0.7 574,668 + PP_0488 0.80 +0.2 574,668 + PP_0488 0.80 -2.2 574,668 + PP_0488 0.80 +0.7 574,668 + PP_0488 0.80 -0.9 574,668 + PP_0488 0.80 +0.1 574,669 - PP_0488 0.81 +1.4 574,669 - PP_0488 0.81 -0.2 574,669 - PP_0488 0.81 +0.1 574,669 - PP_0488 0.81 +0.1 574,738 + PP_0488 0.90 +0.1 574,739 - PP_0488 0.90 +0.8 574,744 + -0.5 574,744 + +0.0 574,744 + +0.7 574,745 - +1.0 574,745 - -0.3 574,745 - -1.3 574,866 + -0.9 575,120 + -1.1 575,197 + -0.7 575,198 - -1.6 575,489 + PP_0489 0.17 -0.3 575,490 - PP_0489 0.17 -1.4 575,588 + PP_0489 0.20 -0.4 575,588 + PP_0489 0.20 +0.1 575,588 + PP_0489 0.20 -0.2 575,777 + PP_0489 0.26 -0.7 575,777 + PP_0489 0.26 +2.5 575,777 + PP_0489 0.26 +0.7 575,780 + PP_0489 0.27 -1.5 575,781 - PP_0489 0.27 -2.2 575,781 - PP_0489 0.27 -0.2 575,781 - PP_0489 0.27 -1.4
Or see this region's nucleotide sequence