Strain Fitness in Pseudomonas putida KT2440 around PP_0180

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0179 and PP_0180 are separated by 143 nucleotidesPP_0180 and PP_0181 are separated by 62 nucleotidesPP_0181 and PP_0182 are separated by 69 nucleotidesPP_0182 and PP_0183 are separated by 148 nucleotides PP_0179: PP_0179 - putative efflux transporter, at 230,340 to 231,758 _0179 PP_0180: PP_0180 - putative cytochrome c family protein, at 231,902 to 233,812 _0180 PP_0181: PP_0181 - conserved protein of unknown function, at 233,875 to 234,120 _0181 PP_0182: PP_0182 - conserved protein of unknown function, at 234,190 to 234,492 _0182 PP_0183: PP_0183 - glutathione S-transferase, at 234,641 to 235,303 _0183 Position (kb) 231 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 230.910 kb on + strand, within PP_0179at 230.911 kb on - strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.255 kb on + strand, within PP_0179at 231.255 kb on + strand, within PP_0179at 231.256 kb on - strand, within PP_0179at 231.257 kb on + strand, within PP_0179at 231.258 kb on - strand, within PP_0179at 231.258 kb on - strand, within PP_0179at 231.513 kb on + strand, within PP_0179at 231.514 kb on - strand, within PP_0179at 231.597 kb on + strand, within PP_0179at 231.648 kb on + strandat 231.648 kb on + strandat 231.649 kb on - strandat 231.649 kb on - strandat 231.649 kb on - strandat 231.684 kb on - strandat 231.808 kb on + strandat 232.031 kb on + strandat 232.031 kb on + strandat 232.032 kb on - strandat 232.119 kb on + strand, within PP_0180at 232.154 kb on - strand, within PP_0180at 232.223 kb on - strand, within PP_0180at 232.223 kb on - strand, within PP_0180at 232.223 kb on - strand, within PP_0180at 232.275 kb on - strand, within PP_0180at 232.446 kb on + strand, within PP_0180at 232.446 kb on + strand, within PP_0180at 232.447 kb on - strand, within PP_0180at 232.447 kb on - strand, within PP_0180at 232.463 kb on + strand, within PP_0180at 232.463 kb on + strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.465 kb on + strand, within PP_0180at 232.465 kb on + strand, within PP_0180at 232.486 kb on - strand, within PP_0180at 232.553 kb on + strand, within PP_0180at 232.553 kb on + strand, within PP_0180at 232.553 kb on + strand, within PP_0180at 232.554 kb on - strand, within PP_0180at 232.555 kb on + strand, within PP_0180at 232.710 kb on + strand, within PP_0180at 232.711 kb on - strand, within PP_0180at 232.739 kb on + strandat 232.739 kb on + strand, within PP_0180at 232.802 kb on + strand, within PP_0180at 232.802 kb on + strand, within PP_0180at 232.802 kb on + strand, within PP_0180at 232.802 kb on + strand, within PP_0180at 232.802 kb on + strand, within PP_0180at 232.803 kb on - strand, within PP_0180at 232.803 kb on - strand, within PP_0180at 232.803 kb on - strand, within PP_0180at 232.803 kb on - strand, within PP_0180at 232.803 kb on - strand, within PP_0180at 232.910 kb on + strand, within PP_0180at 232.911 kb on - strand, within PP_0180at 232.911 kb on - strand, within PP_0180at 233.036 kb on + strand, within PP_0180at 233.036 kb on + strand, within PP_0180at 233.036 kb on + strand, within PP_0180at 233.036 kb on + strand, within PP_0180at 233.037 kb on - strand, within PP_0180at 233.037 kb on - strand, within PP_0180at 233.037 kb on - strand, within PP_0180at 233.037 kb on - strand, within PP_0180at 233.037 kb on - strand, within PP_0180at 233.037 kb on - strand, within PP_0180at 233.038 kb on + strand, within PP_0180at 233.038 kb on + strand, within PP_0180at 233.039 kb on - strand, within PP_0180at 233.039 kb on - strand, within PP_0180at 233.039 kb on - strand, within PP_0180at 233.208 kb on - strand, within PP_0180at 233.208 kb on - strand, within PP_0180at 233.208 kb on - strand, within PP_0180at 233.208 kb on - strand, within PP_0180at 233.208 kb on - strand, within PP_0180at 233.336 kb on + strand, within PP_0180at 233.337 kb on - strand, within PP_0180at 233.405 kb on + strand, within PP_0180at 233.436 kb on - strand, within PP_0180at 233.436 kb on - strand, within PP_0180at 233.610 kb on + strand, within PP_0180at 233.614 kb on - strand, within PP_0180at 233.614 kb on - strand, within PP_0180at 233.717 kb on + strandat 233.718 kb on - strandat 233.766 kb on - strandat 233.908 kb on + strand, within PP_0181at 233.908 kb on + strand, within PP_0181at 233.908 kb on + strand, within PP_0181at 233.909 kb on - strand, within PP_0181at 233.954 kb on + strand, within PP_0181at 234.037 kb on + strand, within PP_0181at 234.038 kb on - strand, within PP_0181at 234.082 kb on + strand, within PP_0181at 234.254 kb on + strand, within PP_0182at 234.254 kb on + strand, within PP_0182at 234.255 kb on - strand, within PP_0182at 234.283 kb on + strand, within PP_0182at 234.283 kb on + strand, within PP_0182at 234.505 kb on - strandat 234.505 kb on - strandat 234.505 kb on - strandat 234.505 kb on - strandat 234.533 kb on + strandat 234.533 kb on + strandat 234.596 kb on + strandat 234.596 kb on + strandat 234.597 kb on - strandat 234.597 kb on - strandat 234.598 kb on + strandat 234.599 kb on - strandat 234.599 kb on - strandat 234.599 kb on - strandat 234.599 kb on - strandat 234.674 kb on + strandat 234.675 kb on - strandat 234.677 kb on + strandat 234.677 kb on + strandat 234.677 kb on + strandat 234.677 kb on + strandat 234.677 kb on + strandat 234.678 kb on - strandat 234.678 kb on - strandat 234.678 kb on - strandat 234.737 kb on + strand, within PP_0183at 234.738 kb on - strand, within PP_0183

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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230,910 + PP_0179 0.40 +0.1
230,911 - PP_0179 0.40 -2.2
231,081 + PP_0179 0.52 -0.1
231,081 + PP_0179 0.52 -0.6
231,081 + PP_0179 0.52 -1.4
231,081 + PP_0179 0.52 -1.7
231,081 + PP_0179 0.52 -1.8
231,081 + PP_0179 0.52 +1.6
231,081 + PP_0179 0.52 -0.2
231,082 - PP_0179 0.52 +0.9
231,082 - PP_0179 0.52 -1.0
231,082 - PP_0179 0.52 -0.2
231,082 - PP_0179 0.52 -0.6
231,082 - PP_0179 0.52 -0.6
231,082 - PP_0179 0.52 -0.2
231,082 - PP_0179 0.52 +0.9
231,082 - PP_0179 0.52 +0.2
231,255 + PP_0179 0.64 +0.3
231,255 + PP_0179 0.64 -0.8
231,256 - PP_0179 0.65 -0.7
231,257 + PP_0179 0.65 +0.2
231,258 - PP_0179 0.65 +0.8
231,258 - PP_0179 0.65 -0.8
231,513 + PP_0179 0.83 -0.2
231,514 - PP_0179 0.83 +0.0
231,597 + PP_0179 0.89 +0.7
231,648 + -0.0
231,648 + +3.9
231,649 - -0.1
231,649 - +2.0
231,649 - +0.3
231,684 - +2.6
231,808 + +0.2
232,031 + -1.5
232,031 + +2.5
232,032 - +1.5
232,119 + PP_0180 0.11 +0.7
232,154 - PP_0180 0.13 -0.3
232,223 - PP_0180 0.17 +1.1
232,223 - PP_0180 0.17 +2.7
232,223 - PP_0180 0.17 +0.3
232,275 - PP_0180 0.20 +0.7
232,446 + PP_0180 0.28 -1.4
232,446 + PP_0180 0.28 +1.3
232,447 - PP_0180 0.29 -0.0
232,447 - PP_0180 0.29 -0.1
232,463 + PP_0180 0.29 -1.5
232,463 + PP_0180 0.29 -1.5
232,464 - PP_0180 0.29 -0.3
232,464 - PP_0180 0.29 +0.0
232,464 - PP_0180 0.29 +1.1
232,464 - PP_0180 0.29 -0.2
232,464 - PP_0180 0.29 +0.7
232,464 - PP_0180 0.29 +0.2
232,464 - PP_0180 0.29 -0.3
232,464 - PP_0180 0.29 +0.5
232,464 - PP_0180 0.29 -0.8
232,465 + PP_0180 0.29 -1.1
232,465 + PP_0180 0.29 -1.2
232,486 - PP_0180 0.31 +0.7
232,553 + PP_0180 0.34 +1.1
232,553 + PP_0180 0.34 -0.1
232,553 + PP_0180 0.34 -1.3
232,554 - PP_0180 0.34 +0.3
232,555 + PP_0180 0.34 +0.7
232,710 + PP_0180 0.42 +0.6
232,711 - PP_0180 0.42 -2.1
232,739 + +1.6
232,739 + PP_0180 0.44 -1.2
232,802 + PP_0180 0.47 -0.1
232,802 + PP_0180 0.47 -0.4
232,802 + PP_0180 0.47 -0.0
232,802 + PP_0180 0.47 +1.0
232,802 + PP_0180 0.47 +0.8
232,803 - PP_0180 0.47 +0.3
232,803 - PP_0180 0.47 +0.1
232,803 - PP_0180 0.47 -1.6
232,803 - PP_0180 0.47 +0.6
232,803 - PP_0180 0.47 -1.3
232,910 + PP_0180 0.53 -0.4
232,911 - PP_0180 0.53 +0.1
232,911 - PP_0180 0.53 +1.8
233,036 + PP_0180 0.59 -0.2
233,036 + PP_0180 0.59 +0.2
233,036 + PP_0180 0.59 +0.2
233,036 + PP_0180 0.59 -0.4
233,037 - PP_0180 0.59 +0.7
233,037 - PP_0180 0.59 +0.8
233,037 - PP_0180 0.59 +0.2
233,037 - PP_0180 0.59 +1.3
233,037 - PP_0180 0.59 +2.4
233,037 - PP_0180 0.59 +0.4
233,038 + PP_0180 0.59 +0.6
233,038 + PP_0180 0.59 -0.4
233,039 - PP_0180 0.59 +3.6
233,039 - PP_0180 0.59 +0.1
233,039 - PP_0180 0.59 +1.8
233,208 - PP_0180 0.68 -0.6
233,208 - PP_0180 0.68 -0.3
233,208 - PP_0180 0.68 +10.0
233,208 - PP_0180 0.68 -1.3
233,208 - PP_0180 0.68 -1.6
233,336 + PP_0180 0.75 +0.5
233,337 - PP_0180 0.75 -1.4
233,405 + PP_0180 0.79 -0.9
233,436 - PP_0180 0.80 -0.3
233,436 - PP_0180 0.80 -0.7
233,610 + PP_0180 0.89 +0.0
233,614 - PP_0180 0.90 -1.0
233,614 - PP_0180 0.90 +0.7
233,717 + +0.9
233,718 - +0.1
233,766 - -0.6
233,908 + PP_0181 0.13 -1.2
233,908 + PP_0181 0.13 -2.3
233,908 + PP_0181 0.13 +0.1
233,909 - PP_0181 0.14 -0.4
233,954 + PP_0181 0.32 +0.7
234,037 + PP_0181 0.66 -2.2
234,038 - PP_0181 0.66 -0.7
234,082 + PP_0181 0.84 +0.3
234,254 + PP_0182 0.21 +0.8
234,254 + PP_0182 0.21 -0.0
234,255 - PP_0182 0.21 -0.6
234,283 + PP_0182 0.31 +2.1
234,283 + PP_0182 0.31 +1.0
234,505 - +0.2
234,505 - +1.6
234,505 - -0.8
234,505 - +1.3
234,533 + +1.6
234,533 + +0.0
234,596 + +0.0
234,596 + -2.0
234,597 - +1.6
234,597 - +0.1
234,598 + -1.3
234,599 - -0.4
234,599 - -1.2
234,599 - -0.0
234,599 - +0.0
234,674 + +1.0
234,675 - +0.1
234,677 + +0.1
234,677 + -0.8
234,677 + +0.9
234,677 + -0.2
234,677 + -0.5
234,678 - -0.2
234,678 - +2.6
234,678 - +2.0
234,737 + PP_0183 0.14 +0.7
234,738 - PP_0183 0.15 +0.0

Or see this region's nucleotide sequence