Strain Fitness in Pseudomonas putida KT2440 around PP_1155

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1154 and PP_1155 are separated by 51 nucleotidesPP_1155 and PP_1156 are separated by 278 nucleotides PP_1154: PP_1154 - Sensory box protein, at 1,320,145 to 1,322,730 _1154 PP_1155: PP_1155 - YaiC/YhcK/ArdA family protein, at 1,322,782 to 1,323,855 _1155 PP_1156: PP_1156 - putative inner membrane protein, at 1,324,134 to 1,325,030 _1156 Position (kb) 1322 1323 1324Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1321.904 kb on + strand, within PP_1154at 1321.904 kb on + strand, within PP_1154at 1321.905 kb on - strand, within PP_1154at 1321.924 kb on + strand, within PP_1154at 1321.924 kb on + strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.930 kb on + strand, within PP_1154at 1322.137 kb on + strand, within PP_1154at 1322.137 kb on + strand, within PP_1154at 1322.137 kb on + strand, within PP_1154at 1322.138 kb on - strand, within PP_1154at 1322.138 kb on - strand, within PP_1154at 1322.138 kb on - strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.310 kb on + strand, within PP_1154at 1322.311 kb on - strand, within PP_1154at 1322.311 kb on - strand, within PP_1154at 1322.311 kb on - strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.357 kb on + strand, within PP_1154at 1322.358 kb on - strand, within PP_1154at 1322.358 kb on - strand, within PP_1154at 1322.358 kb on - strand, within PP_1154at 1322.358 kb on - strand, within PP_1154at 1322.411 kb on + strand, within PP_1154at 1322.411 kb on + strand, within PP_1154at 1322.426 kb on - strand, within PP_1154at 1322.442 kb on - strand, within PP_1154at 1322.502 kb on - strandat 1322.568 kb on + strandat 1322.569 kb on - strandat 1322.865 kb on - strandat 1322.865 kb on - strandat 1322.865 kb on - strandat 1322.962 kb on + strand, within PP_1155at 1322.978 kb on + strand, within PP_1155at 1322.979 kb on - strand, within PP_1155at 1323.133 kb on + strand, within PP_1155at 1323.134 kb on - strand, within PP_1155at 1323.134 kb on - strand, within PP_1155at 1323.357 kb on - strand, within PP_1155at 1323.357 kb on - strand, within PP_1155at 1323.410 kb on + strand, within PP_1155at 1323.410 kb on + strand, within PP_1155at 1323.411 kb on - strand, within PP_1155at 1323.411 kb on - strandat 1323.411 kb on - strand, within PP_1155at 1323.472 kb on + strand, within PP_1155at 1323.680 kb on + strand, within PP_1155at 1323.681 kb on - strand, within PP_1155at 1323.681 kb on - strand, within PP_1155at 1323.715 kb on + strand, within PP_1155at 1323.715 kb on + strand, within PP_1155at 1323.810 kb on - strandat 1323.810 kb on - strandat 1323.810 kb on - strandat 1323.856 kb on - strandat 1323.856 kb on - strandat 1323.856 kb on - strandat 1323.881 kb on - strandat 1323.895 kb on - strandat 1323.908 kb on - strandat 1323.988 kb on + strandat 1324.003 kb on - strandat 1324.005 kb on + strandat 1324.005 kb on + strandat 1324.006 kb on - strandat 1324.006 kb on - strandat 1324.132 kb on + strandat 1324.339 kb on + strand, within PP_1156at 1324.339 kb on + strand, within PP_1156at 1324.340 kb on - strand, within PP_1156at 1324.365 kb on + strand, within PP_1156at 1324.365 kb on + strand, within PP_1156at 1324.365 kb on + strand, within PP_1156at 1324.365 kb on + strand, within PP_1156at 1324.365 kb on + strand, within PP_1156at 1324.366 kb on - strand, within PP_1156at 1324.366 kb on - strand, within PP_1156at 1324.366 kb on - strand, within PP_1156at 1324.366 kb on - strand, within PP_1156at 1324.366 kb on - strand, within PP_1156at 1324.367 kb on + strand, within PP_1156at 1324.367 kb on + strand, within PP_1156at 1324.367 kb on + strand, within PP_1156at 1324.367 kb on + strand, within PP_1156at 1324.367 kb on + strand, within PP_1156at 1324.368 kb on - strand, within PP_1156at 1324.368 kb on - strand, within PP_1156at 1324.368 kb on - strand, within PP_1156at 1324.368 kb on - strand, within PP_1156at 1324.368 kb on - strand, within PP_1156at 1324.368 kb on - strand, within PP_1156at 1324.368 kb on - strand, within PP_1156at 1324.368 kb on - strand, within PP_1156at 1324.396 kb on + strand, within PP_1156at 1324.397 kb on - strand, within PP_1156at 1324.408 kb on - strand, within PP_1156at 1324.482 kb on + strand, within PP_1156at 1324.483 kb on - strand, within PP_1156at 1324.483 kb on - strand, within PP_1156at 1324.521 kb on + strand, within PP_1156at 1324.521 kb on + strand, within PP_1156at 1324.521 kb on + strand, within PP_1156at 1324.521 kb on + strand, within PP_1156at 1324.647 kb on + strand, within PP_1156at 1324.648 kb on - strand, within PP_1156at 1324.648 kb on - strand, within PP_1156at 1324.673 kb on + strand, within PP_1156at 1324.673 kb on + strand, within PP_1156at 1324.674 kb on - strand, within PP_1156at 1324.709 kb on + strand, within PP_1156at 1324.710 kb on - strand, within PP_1156at 1324.765 kb on + strand, within PP_1156at 1324.817 kb on - strand, within PP_1156at 1324.817 kb on - strand, within PP_1156at 1324.821 kb on + strand, within PP_1156

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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1,321,904 + PP_1154 0.68 +0.6
1,321,904 + PP_1154 0.68 +3.6
1,321,905 - PP_1154 0.68 +1.6
1,321,924 + PP_1154 0.69 +0.6
1,321,924 + PP_1154 0.69 +0.4
1,321,925 - PP_1154 0.69 +0.0
1,321,925 - PP_1154 0.69 -1.4
1,321,925 - PP_1154 0.69 -0.2
1,321,925 - PP_1154 0.69 +2.5
1,321,925 - PP_1154 0.69 +0.3
1,321,930 + PP_1154 0.69 -0.7
1,322,137 + PP_1154 0.77 +0.3
1,322,137 + PP_1154 0.77 +0.1
1,322,137 + PP_1154 0.77 +0.2
1,322,138 - PP_1154 0.77 -0.2
1,322,138 - PP_1154 0.77 +0.9
1,322,138 - PP_1154 0.77 -0.7
1,322,308 + PP_1154 0.84 -0.0
1,322,308 + PP_1154 0.84 +0.1
1,322,308 + PP_1154 0.84 +0.5
1,322,308 + PP_1154 0.84 +0.2
1,322,308 + PP_1154 0.84 +0.1
1,322,308 + PP_1154 0.84 -0.2
1,322,308 + PP_1154 0.84 -0.2
1,322,308 + PP_1154 0.84 +0.8
1,322,309 - PP_1154 0.84 +0.6
1,322,309 - PP_1154 0.84 -0.2
1,322,309 - PP_1154 0.84 +0.1
1,322,309 - PP_1154 0.84 +1.0
1,322,309 - PP_1154 0.84 +0.0
1,322,309 - PP_1154 0.84 +0.4
1,322,309 - PP_1154 0.84 -0.1
1,322,309 - PP_1154 0.84 +0.2
1,322,309 - PP_1154 0.84 +0.8
1,322,309 - PP_1154 0.84 +1.0
1,322,309 - PP_1154 0.84 -0.2
1,322,310 + PP_1154 0.84 +0.6
1,322,311 - PP_1154 0.84 +0.3
1,322,311 - PP_1154 0.84 +0.2
1,322,311 - PP_1154 0.84 +1.0
1,322,312 + PP_1154 0.84 +0.6
1,322,312 + PP_1154 0.84 +0.1
1,322,312 + PP_1154 0.84 +0.1
1,322,312 + PP_1154 0.84 +1.4
1,322,312 + PP_1154 0.84 +0.6
1,322,312 + PP_1154 0.84 -0.2
1,322,312 + PP_1154 0.84 -1.4
1,322,312 + PP_1154 0.84 -0.3
1,322,312 + PP_1154 0.84 -0.5
1,322,312 + PP_1154 0.84 -0.3
1,322,312 + PP_1154 0.84 -0.2
1,322,312 + PP_1154 0.84 +2.2
1,322,313 - PP_1154 0.84 -0.1
1,322,313 - PP_1154 0.84 +0.4
1,322,313 - PP_1154 0.84 +0.3
1,322,313 - PP_1154 0.84 -0.4
1,322,313 - PP_1154 0.84 +0.6
1,322,313 - PP_1154 0.84 +2.6
1,322,357 + PP_1154 0.86 +0.6
1,322,358 - PP_1154 0.86 +1.2
1,322,358 - PP_1154 0.86 +0.8
1,322,358 - PP_1154 0.86 +0.7
1,322,358 - PP_1154 0.86 -0.5
1,322,411 + PP_1154 0.88 +0.2
1,322,411 + PP_1154 0.88 +0.8
1,322,426 - PP_1154 0.88 +1.0
1,322,442 - PP_1154 0.89 +0.4
1,322,502 - +0.0
1,322,568 + -0.5
1,322,569 - -0.1
1,322,865 - +0.8
1,322,865 - +1.0
1,322,865 - +0.9
1,322,962 + PP_1155 0.17 +1.2
1,322,978 + PP_1155 0.18 +2.9
1,322,979 - PP_1155 0.18 -0.2
1,323,133 + PP_1155 0.33 +1.2
1,323,134 - PP_1155 0.33 +1.1
1,323,134 - PP_1155 0.33 -0.2
1,323,357 - PP_1155 0.54 -0.1
1,323,357 - PP_1155 0.54 +0.3
1,323,410 + PP_1155 0.58 +0.1
1,323,410 + PP_1155 0.58 -0.1
1,323,411 - PP_1155 0.59 +1.0
1,323,411 - +1.6
1,323,411 - PP_1155 0.59 +0.1
1,323,472 + PP_1155 0.64 +0.1
1,323,680 + PP_1155 0.84 +2.0
1,323,681 - PP_1155 0.84 +0.1
1,323,681 - PP_1155 0.84 +0.6
1,323,715 + PP_1155 0.87 +1.8
1,323,715 + PP_1155 0.87 +1.9
1,323,810 - +0.8
1,323,810 - +0.1
1,323,810 - +0.2
1,323,856 - -0.0
1,323,856 - -0.2
1,323,856 - +1.0
1,323,881 - +0.2
1,323,895 - +0.3
1,323,908 - +0.5
1,323,988 + -0.4
1,324,003 - -0.3
1,324,005 + +0.5
1,324,005 + +0.6
1,324,006 - -0.5
1,324,006 - -1.0
1,324,132 + +0.1
1,324,339 + PP_1156 0.23 -0.9
1,324,339 + PP_1156 0.23 +0.3
1,324,340 - PP_1156 0.23 -0.2
1,324,365 + PP_1156 0.26 +0.1
1,324,365 + PP_1156 0.26 -0.3
1,324,365 + PP_1156 0.26 -0.6
1,324,365 + PP_1156 0.26 -0.9
1,324,365 + PP_1156 0.26 +0.3
1,324,366 - PP_1156 0.26 +0.7
1,324,366 - PP_1156 0.26 -1.4
1,324,366 - PP_1156 0.26 +0.1
1,324,366 - PP_1156 0.26 -0.7
1,324,366 - PP_1156 0.26 +1.8
1,324,367 + PP_1156 0.26 +1.4
1,324,367 + PP_1156 0.26 -1.2
1,324,367 + PP_1156 0.26 +1.0
1,324,367 + PP_1156 0.26 -0.1
1,324,367 + PP_1156 0.26 -0.8
1,324,368 - PP_1156 0.26 +3.2
1,324,368 - PP_1156 0.26 +0.2
1,324,368 - PP_1156 0.26 -0.6
1,324,368 - PP_1156 0.26 -0.7
1,324,368 - PP_1156 0.26 -0.0
1,324,368 - PP_1156 0.26 +0.5
1,324,368 - PP_1156 0.26 +0.2
1,324,368 - PP_1156 0.26 -0.7
1,324,396 + PP_1156 0.29 +0.5
1,324,397 - PP_1156 0.29 -0.0
1,324,408 - PP_1156 0.31 -0.6
1,324,482 + PP_1156 0.39 -2.8
1,324,483 - PP_1156 0.39 -0.4
1,324,483 - PP_1156 0.39 -0.1
1,324,521 + PP_1156 0.43 -0.1
1,324,521 + PP_1156 0.43 +0.3
1,324,521 + PP_1156 0.43 -1.0
1,324,521 + PP_1156 0.43 -0.6
1,324,647 + PP_1156 0.57 +0.4
1,324,648 - PP_1156 0.57 -1.7
1,324,648 - PP_1156 0.57 -1.4
1,324,673 + PP_1156 0.60 +0.3
1,324,673 + PP_1156 0.60 +2.2
1,324,674 - PP_1156 0.60 -0.4
1,324,709 + PP_1156 0.64 +1.2
1,324,710 - PP_1156 0.64 +0.2
1,324,765 + PP_1156 0.70 +0.7
1,324,817 - PP_1156 0.76 -1.6
1,324,817 - PP_1156 0.76 -1.2
1,324,821 + PP_1156 0.77 -0.0

Or see this region's nucleotide sequence