Strain Fitness in Pseudomonas putida KT2440 around PP_0578

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0576 and PP_0577 are separated by 19 nucleotidesPP_0577 and PP_0578 overlap by 38 nucleotidesPP_0578 and PP_0579 overlap by 4 nucleotidesPP_0579 and PP_0580 overlap by 16 nucleotides PP_0576: PP_0576 - putative Lipoprotein, at 674,414 to 674,983 _0576 PP_0577: PP_0577 - conserved protein of unknown function, at 675,003 to 675,698 _0577 PP_0578: PP_0578 - putative Methyltransferase, at 675,661 to 676,410 _0578 PP_0579: PP_0579 - conserved protein of unknown function, at 676,407 to 676,805 _0579 PP_0580: PP_0580 - MaoC domain protein, at 676,790 to 677,641 _0580 Position (kb) 675 676 677Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 674.668 kb on - strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.717 kb on + strand, within PP_0576at 674.718 kb on - strand, within PP_0576at 674.718 kb on - strand, within PP_0576at 674.718 kb on - strand, within PP_0576at 674.718 kb on - strand, within PP_0576at 674.748 kb on - strand, within PP_0576at 674.875 kb on + strand, within PP_0576at 674.876 kb on - strand, within PP_0576at 674.876 kb on - strand, within PP_0576at 674.876 kb on - strand, within PP_0576at 674.880 kb on + strand, within PP_0576at 674.963 kb on + strandat 674.964 kb on - strandat 674.964 kb on - strandat 675.001 kb on + strandat 675.001 kb on + strandat 675.001 kb on + strandat 675.001 kb on + strandat 675.002 kb on - strandat 675.002 kb on - strandat 675.005 kb on - strandat 675.137 kb on - strand, within PP_0577at 675.137 kb on - strand, within PP_0577at 675.137 kb on - strand, within PP_0577at 675.137 kb on - strand, within PP_0577at 675.172 kb on + strand, within PP_0577at 675.172 kb on + strand, within PP_0577at 675.172 kb on + strand, within PP_0577at 675.173 kb on - strand, within PP_0577at 675.176 kb on + strand, within PP_0577at 675.177 kb on - strand, within PP_0577at 675.199 kb on + strand, within PP_0577at 675.259 kb on + strand, within PP_0577at 675.259 kb on + strand, within PP_0577at 675.263 kb on - strand, within PP_0577at 675.263 kb on - strand, within PP_0577at 675.263 kb on - strand, within PP_0577at 675.263 kb on - strand, within PP_0577at 675.271 kb on + strand, within PP_0577at 675.271 kb on + strand, within PP_0577at 675.271 kb on + strand, within PP_0577at 675.272 kb on - strand, within PP_0577at 675.280 kb on + strand, within PP_0577at 675.317 kb on + strand, within PP_0577at 675.499 kb on + strand, within PP_0577at 675.499 kb on + strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.631 kb on + strandat 675.631 kb on + strandat 675.640 kb on + strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.789 kb on - strand, within PP_0578at 675.789 kb on - strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.977 kb on + strand, within PP_0578at 675.977 kb on + strand, within PP_0578at 676.358 kb on + strandat 676.358 kb on + strandat 676.359 kb on - strandat 676.359 kb on - strandat 676.498 kb on + strand, within PP_0579at 676.498 kb on + strand, within PP_0579at 676.498 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.724 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.734 kb on + strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.735 kb on - strand, within PP_0579at 676.816 kb on + strandat 676.816 kb on + strandat 676.816 kb on + strandat 676.817 kb on - strandat 676.817 kb on - strandat 676.935 kb on + strand, within PP_0580at 676.936 kb on - strand, within PP_0580at 676.936 kb on - strand, within PP_0580at 677.054 kb on - strand, within PP_0580at 677.061 kb on + strand, within PP_0580at 677.061 kb on + strand, within PP_0580at 677.062 kb on - strand, within PP_0580at 677.082 kb on + strand, within PP_0580at 677.363 kb on + strand, within PP_0580at 677.364 kb on - strand, within PP_0580

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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674,668 - PP_0576 0.45 -1.0
674,709 + PP_0576 0.52 +1.4
674,709 + PP_0576 0.52 +0.7
674,709 + PP_0576 0.52 -0.1
674,709 + PP_0576 0.52 +0.6
674,709 + PP_0576 0.52 -0.6
674,710 - PP_0576 0.52 -1.0
674,710 - PP_0576 0.52 +2.2
674,710 - PP_0576 0.52 +0.3
674,710 - PP_0576 0.52 -0.2
674,710 - PP_0576 0.52 -0.9
674,710 - PP_0576 0.52 -1.5
674,710 - PP_0576 0.52 -3.1
674,717 + PP_0576 0.53 -1.4
674,718 - PP_0576 0.53 -1.9
674,718 - PP_0576 0.53 -0.6
674,718 - PP_0576 0.53 -0.9
674,718 - PP_0576 0.53 -1.0
674,748 - PP_0576 0.59 -0.6
674,875 + PP_0576 0.81 +0.5
674,876 - PP_0576 0.81 +0.7
674,876 - PP_0576 0.81 +0.2
674,876 - PP_0576 0.81 +2.1
674,880 + PP_0576 0.82 -1.1
674,963 + +0.2
674,964 - +0.8
674,964 - +1.9
675,001 + -0.5
675,001 + +0.1
675,001 + +1.9
675,001 + -1.1
675,002 - +0.9
675,002 - +0.5
675,005 - +0.6
675,137 - PP_0577 0.19 +0.5
675,137 - PP_0577 0.19 -0.1
675,137 - PP_0577 0.19 -1.3
675,137 - PP_0577 0.19 +0.1
675,172 + PP_0577 0.24 -0.2
675,172 + PP_0577 0.24 -0.6
675,172 + PP_0577 0.24 +0.6
675,173 - PP_0577 0.24 -0.4
675,176 + PP_0577 0.25 -0.3
675,177 - PP_0577 0.25 -0.0
675,199 + PP_0577 0.28 -0.1
675,259 + PP_0577 0.37 -0.5
675,259 + PP_0577 0.37 -0.2
675,263 - PP_0577 0.37 -1.0
675,263 - PP_0577 0.37 +0.6
675,263 - PP_0577 0.37 -0.1
675,263 - PP_0577 0.37 +0.2
675,271 + PP_0577 0.39 +0.3
675,271 + PP_0577 0.39 -1.3
675,271 + PP_0577 0.39 +0.3
675,272 - PP_0577 0.39 -1.6
675,280 + PP_0577 0.40 -0.1
675,317 + PP_0577 0.45 -0.9
675,499 + PP_0577 0.71 +0.4
675,499 + PP_0577 0.71 +0.8
675,569 - PP_0577 0.81 +0.4
675,569 - PP_0577 0.81 -0.3
675,569 - PP_0577 0.81 +2.8
675,569 - PP_0577 0.81 +0.4
675,569 - PP_0577 0.81 +0.5
675,631 + +1.0
675,631 + +1.1
675,640 + +0.3
675,641 - -0.4
675,641 - +1.0
675,641 - -0.7
675,641 - -0.2
675,641 - -0.7
675,641 - +1.9
675,786 + PP_0578 0.17 +0.1
675,786 + PP_0578 0.17 +0.9
675,786 + PP_0578 0.17 -0.4
675,786 + PP_0578 0.17 +1.3
675,786 + PP_0578 0.17 -1.1
675,786 + PP_0578 0.17 +0.9
675,786 + PP_0578 0.17 -0.5
675,787 - PP_0578 0.17 -0.6
675,787 - PP_0578 0.17 +0.6
675,787 - PP_0578 0.17 +2.1
675,788 + PP_0578 0.17 -0.0
675,788 + PP_0578 0.17 +0.8
675,788 + PP_0578 0.17 -1.2
675,788 + PP_0578 0.17 +1.1
675,789 - PP_0578 0.17 +1.4
675,789 - PP_0578 0.17 -1.8
675,834 + PP_0578 0.23 -0.0
675,834 + PP_0578 0.23 +0.5
675,834 + PP_0578 0.23 +0.7
675,835 - PP_0578 0.23 +2.3
675,835 - PP_0578 0.23 -0.8
675,835 - PP_0578 0.23 +0.6
675,977 + PP_0578 0.42 -0.5
675,977 + PP_0578 0.42 +2.6
676,358 + +0.1
676,358 + +0.4
676,359 - -0.3
676,359 - -0.6
676,498 + PP_0579 0.23 +0.5
676,498 + PP_0579 0.23 +1.1
676,498 + PP_0579 0.23 -0.4
676,724 + PP_0579 0.79 -2.0
676,724 + PP_0579 0.79 -0.4
676,724 + PP_0579 0.79 +1.4
676,724 + PP_0579 0.79 -0.4
676,734 + PP_0579 0.82 -1.0
676,734 + PP_0579 0.82 +1.1
676,734 + PP_0579 0.82 +0.2
676,734 + PP_0579 0.82 +0.1
676,734 + PP_0579 0.82 -0.1
676,735 - PP_0579 0.82 +0.6
676,735 - PP_0579 0.82 -0.5
676,735 - PP_0579 0.82 +0.2
676,816 + -0.8
676,816 + -1.7
676,816 + +1.1
676,817 - +3.5
676,817 - +2.6
676,935 + PP_0580 0.17 -0.0
676,936 - PP_0580 0.17 +0.0
676,936 - PP_0580 0.17 -1.7
677,054 - PP_0580 0.31 +0.3
677,061 + PP_0580 0.32 +2.1
677,061 + PP_0580 0.32 -0.4
677,062 - PP_0580 0.32 -1.3
677,082 + PP_0580 0.34 -0.1
677,363 + PP_0580 0.67 -0.0
677,364 - PP_0580 0.67 -1.0

Or see this region's nucleotide sequence