Strain Fitness in Pseudomonas putida KT2440 around PP_0372

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0371 and PP_0372 are separated by 210 nucleotidesPP_0372 and PP_0373 are separated by 147 nucleotidesPP_0373 and PP_5444 are separated by 64 nucleotides PP_0371: PP_0371 - Transcriptional regulator, LysR family, at 450,949 to 451,872 _0371 PP_0372: PP_0372 - Acetylornithine aminotransferase 2, at 452,083 to 453,363 _0372 PP_0373: PP_0373 - conserved membrane protein of unknown function, at 453,511 to 453,669 _0373 PP_5444: PP_5444 - protein of unknown function, at 453,734 to 454,660 _5444 Position (kb) 452 453 454Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 451.203 kb on + strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.204 kb on - strand, within PP_0371at 451.392 kb on - strand, within PP_0371at 451.392 kb on - strand, within PP_0371at 451.433 kb on + strand, within PP_0371at 451.434 kb on - strand, within PP_0371at 451.583 kb on - strand, within PP_0371at 451.583 kb on - strand, within PP_0371at 451.679 kb on + strand, within PP_0371at 451.679 kb on + strand, within PP_0371at 451.679 kb on + strand, within PP_0371at 451.680 kb on - strand, within PP_0371at 451.680 kb on - strand, within PP_0371at 451.819 kb on + strandat 451.835 kb on + strandat 451.836 kb on - strandat 451.937 kb on - strandat 451.945 kb on - strandat 451.958 kb on - strandat 452.216 kb on + strand, within PP_0372at 452.217 kb on - strand, within PP_0372at 452.266 kb on + strand, within PP_0372at 452.266 kb on + strand, within PP_0372at 452.266 kb on + strand, within PP_0372at 452.267 kb on - strand, within PP_0372at 452.267 kb on - strand, within PP_0372at 452.267 kb on - strand, within PP_0372at 452.267 kb on - strand, within PP_0372at 452.443 kb on + strand, within PP_0372at 452.444 kb on - strand, within PP_0372at 452.451 kb on + strand, within PP_0372at 452.452 kb on - strand, within PP_0372at 452.497 kb on - strand, within PP_0372at 452.538 kb on + strand, within PP_0372at 452.538 kb on + strand, within PP_0372at 452.539 kb on - strand, within PP_0372at 452.714 kb on + strand, within PP_0372at 452.860 kb on + strand, within PP_0372at 452.860 kb on + strand, within PP_0372at 453.113 kb on - strand, within PP_0372at 453.147 kb on - strand, within PP_0372at 453.240 kb on - strandat 453.240 kb on - strandat 453.240 kb on - strandat 453.240 kb on - strandat 453.477 kb on + strandat 453.478 kb on - strandat 453.478 kb on - strandat 453.478 kb on - strandat 453.489 kb on + strandat 453.489 kb on + strandat 453.519 kb on + strandat 453.597 kb on + strand, within PP_0373at 453.597 kb on + strand, within PP_0373at 453.597 kb on + strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.598 kb on - strand, within PP_0373at 453.601 kb on - strand, within PP_0373at 453.622 kb on + strand, within PP_0373at 453.649 kb on + strand, within PP_0373at 453.649 kb on + strand, within PP_0373at 453.649 kb on + strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.650 kb on - strand, within PP_0373at 453.651 kb on + strand, within PP_0373at 453.651 kb on + strand, within PP_0373at 453.652 kb on - strand, within PP_0373at 453.652 kb on - strand, within PP_0373at 453.652 kb on - strand, within PP_0373at 453.735 kb on + strandat 453.750 kb on - strandat 453.769 kb on - strandat 453.804 kb on + strandat 453.822 kb on + strandat 453.822 kb on + strandat 453.860 kb on - strand, within PP_5444at 453.860 kb on - strand, within PP_5444at 453.950 kb on - strand, within PP_5444at 454.065 kb on + strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.066 kb on - strand, within PP_5444at 454.114 kb on - strand, within PP_5444at 454.152 kb on + strand, within PP_5444at 454.152 kb on + strandat 454.153 kb on - strand, within PP_5444at 454.153 kb on - strand, within PP_5444at 454.153 kb on - strand, within PP_5444at 454.210 kb on - strand, within PP_5444at 454.236 kb on + strand, within PP_5444at 454.236 kb on + strand, within PP_5444at 454.258 kb on + strand, within PP_5444at 454.292 kb on - strand, within PP_5444at 454.292 kb on - strand, within PP_5444at 454.340 kb on - strand, within PP_5444at 454.340 kb on - strand, within PP_5444

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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451,203 + PP_0371 0.27 +0.5
451,204 - PP_0371 0.28 -0.4
451,204 - PP_0371 0.28 +0.6
451,204 - PP_0371 0.28 +2.1
451,204 - PP_0371 0.28 +0.5
451,392 - PP_0371 0.48 +1.0
451,392 - PP_0371 0.48 -1.0
451,433 + PP_0371 0.52 -0.5
451,434 - PP_0371 0.52 -0.6
451,583 - PP_0371 0.69 +0.4
451,583 - PP_0371 0.69 +0.3
451,679 + PP_0371 0.79 -0.2
451,679 + PP_0371 0.79 +0.0
451,679 + PP_0371 0.79 -2.0
451,680 - PP_0371 0.79 +0.2
451,680 - PP_0371 0.79 -0.6
451,819 + -0.7
451,835 + +1.5
451,836 - -0.1
451,937 - +0.3
451,945 - -0.6
451,958 - +0.5
452,216 + PP_0372 0.10 +0.2
452,217 - PP_0372 0.10 -1.8
452,266 + PP_0372 0.14 -0.3
452,266 + PP_0372 0.14 +0.9
452,266 + PP_0372 0.14 +0.7
452,267 - PP_0372 0.14 +1.7
452,267 - PP_0372 0.14 -0.2
452,267 - PP_0372 0.14 -0.3
452,267 - PP_0372 0.14 -0.4
452,443 + PP_0372 0.28 +0.4
452,444 - PP_0372 0.28 +6.0
452,451 + PP_0372 0.29 -0.0
452,452 - PP_0372 0.29 +2.6
452,497 - PP_0372 0.32 +1.0
452,538 + PP_0372 0.36 -0.7
452,538 + PP_0372 0.36 -1.3
452,539 - PP_0372 0.36 +0.4
452,714 + PP_0372 0.49 -0.3
452,860 + PP_0372 0.61 +1.0
452,860 + PP_0372 0.61 -0.3
453,113 - PP_0372 0.80 -0.1
453,147 - PP_0372 0.83 +0.0
453,240 - +0.0
453,240 - -1.0
453,240 - +0.6
453,240 - -0.5
453,477 + +1.7
453,478 - -0.3
453,478 - -1.0
453,478 - -0.4
453,489 + +0.7
453,489 + -0.6
453,519 + +1.1
453,597 + PP_0373 0.54 +0.5
453,597 + PP_0373 0.54 +0.2
453,597 + PP_0373 0.54 -0.1
453,598 - PP_0373 0.55 -1.0
453,598 - PP_0373 0.55 +1.9
453,598 - PP_0373 0.55 +0.3
453,598 - PP_0373 0.55 +0.5
453,601 - PP_0373 0.57 +0.0
453,622 + PP_0373 0.70 +0.0
453,649 + PP_0373 0.87 +0.5
453,649 + PP_0373 0.87 +1.1
453,649 + PP_0373 0.87 -0.3
453,650 - PP_0373 0.87 -1.0
453,650 - PP_0373 0.87 +0.7
453,650 - PP_0373 0.87 -0.5
453,650 - PP_0373 0.87 -0.3
453,650 - PP_0373 0.87 +1.2
453,650 - PP_0373 0.87 +0.3
453,651 + PP_0373 0.88 +0.4
453,651 + PP_0373 0.88 -0.4
453,652 - PP_0373 0.89 -0.4
453,652 - PP_0373 0.89 -0.3
453,652 - PP_0373 0.89 +0.5
453,735 + -0.0
453,750 - -0.4
453,769 - -0.3
453,804 + +0.5
453,822 + +0.0
453,822 + +0.8
453,860 - PP_5444 0.14 +0.2
453,860 - PP_5444 0.14 +0.3
453,950 - PP_5444 0.23 +0.4
454,065 + PP_5444 0.36 +1.5
454,066 - PP_5444 0.36 -0.6
454,066 - PP_5444 0.36 +0.2
454,066 - PP_5444 0.36 -0.5
454,066 - PP_5444 0.36 -0.9
454,066 - PP_5444 0.36 -0.2
454,066 - PP_5444 0.36 +0.3
454,114 - PP_5444 0.41 +0.8
454,152 + PP_5444 0.45 +0.0
454,152 + +1.2
454,153 - PP_5444 0.45 -1.0
454,153 - PP_5444 0.45 -0.7
454,153 - PP_5444 0.45 -0.8
454,210 - PP_5444 0.51 -0.3
454,236 + PP_5444 0.54 -0.0
454,236 + PP_5444 0.54 +0.3
454,258 + PP_5444 0.57 +0.8
454,292 - PP_5444 0.60 -1.8
454,292 - PP_5444 0.60 -2.2
454,340 - PP_5444 0.65 -0.1
454,340 - PP_5444 0.65 -0.7

Or see this region's nucleotide sequence