Strain Fitness in Pseudomonas putida KT2440 around PP_0327

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0325 and PP_0326 are separated by 74 nucleotidesPP_0326 and PP_0327 are separated by 11 nucleotidesPP_0327 and PP_0328 are separated by 301 nucleotides PP_0325: PP_0325 - sarcosine oxidase subunit alpha, at 389,727 to 392,741 _0325 PP_0326: PP_0326 - sarcosine oxidase subunit gamma, at 392,816 to 393,448 _0326 PP_0327: PP_0327 - formyltetrahydrofolate deformylase, at 393,460 to 394,317 _0327 PP_0328: PP_0328 - formaldehyde dehydrogenase, at 394,619 to 395,818 _0328 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2at 392.574 kb on + strandat 392.575 kb on - strandat 392.596 kb on - strandat 392.740 kb on - strandat 392.811 kb on - strandat 392.905 kb on - strand, within PP_0326at 392.905 kb on - strand, within PP_0326at 393.260 kb on + strand, within PP_0326at 393.260 kb on + strand, within PP_0326at 393.261 kb on - strand, within PP_0326at 393.261 kb on - strand, within PP_0326at 393.261 kb on - strand, within PP_0326at 393.261 kb on - strand, within PP_0326at 393.446 kb on + strandat 393.446 kb on + strandat 393.446 kb on + strandat 393.446 kb on + strandat 393.447 kb on - strandat 393.539 kb on - strandat 393.539 kb on - strandat 393.560 kb on - strand, within PP_0327at 393.781 kb on + strand, within PP_0327at 393.877 kb on + strand, within PP_0327at 393.878 kb on - strand, within PP_0327at 393.880 kb on + strand, within PP_0327at 393.881 kb on - strand, within PP_0327at 393.979 kb on + strand, within PP_0327at 393.979 kb on + strand, within PP_0327at 393.980 kb on - strand, within PP_0327at 393.980 kb on - strand, within PP_0327at 393.981 kb on + strand, within PP_0327at 393.981 kb on + strand, within PP_0327at 393.981 kb on + strand, within PP_0327at 393.982 kb on - strand, within PP_0327at 393.982 kb on - strand, within PP_0327at 393.982 kb on - strand, within PP_0327at 393.989 kb on + strand, within PP_0327at 393.989 kb on + strand, within PP_0327at 394.036 kb on - strand, within PP_0327at 394.036 kb on - strand, within PP_0327at 394.079 kb on - strand, within PP_0327at 394.090 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.130 kb on - strand, within PP_0327at 394.130 kb on - strand, within PP_0327at 394.130 kb on - strand, within PP_0327at 394.316 kb on - strandat 394.316 kb on - strandat 394.355 kb on + strandat 394.355 kb on + strandat 394.361 kb on + strandat 394.361 kb on + strandat 394.361 kb on + strandat 394.361 kb on + strandat 394.396 kb on - strandat 394.450 kb on + strandat 394.451 kb on - strandat 394.451 kb on - strandat 394.476 kb on - strandat 394.508 kb on + strandat 394.592 kb on + strandat 394.592 kb on + strandat 394.612 kb on + strandat 394.612 kb on + strandat 394.613 kb on - strandat 394.643 kb on + strandat 394.669 kb on - strandat 394.683 kb on - strandat 394.792 kb on + strand, within PP_0328at 394.792 kb on + strand, within PP_0328at 394.792 kb on + strand, within PP_0328at 394.793 kb on - strand, within PP_0328at 394.793 kb on - strand, within PP_0328at 394.988 kb on + strand, within PP_0328at 394.988 kb on + strand, within PP_0328at 394.988 kb on + strand, within PP_0328at 395.033 kb on + strand, within PP_0328at 395.033 kb on + strand, within PP_0328at 395.033 kb on + strand, within PP_0328at 395.034 kb on - strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.189 kb on + strand, within PP_0328at 395.190 kb on - strand, within PP_0328at 395.190 kb on - strand, within PP_0328at 395.259 kb on + strand, within PP_0328at 395.260 kb on - strand, within PP_0328at 395.260 kb on - strand, within PP_0328

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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392,574 + +0.3
392,575 - -0.0
392,596 - -1.2
392,740 - +0.8
392,811 - +1.1
392,905 - PP_0326 0.14 -0.3
392,905 - PP_0326 0.14 +1.0
393,260 + PP_0326 0.70 -1.1
393,260 + PP_0326 0.70 -0.0
393,261 - PP_0326 0.70 +0.8
393,261 - PP_0326 0.70 +0.4
393,261 - PP_0326 0.70 +0.7
393,261 - PP_0326 0.70 +0.1
393,446 + +0.0
393,446 + -1.4
393,446 + -0.2
393,446 + +1.1
393,447 - +0.5
393,539 - -0.2
393,539 - +0.6
393,560 - PP_0327 0.12 -0.7
393,781 + PP_0327 0.37 +1.6
393,877 + PP_0327 0.49 +1.6
393,878 - PP_0327 0.49 -0.4
393,880 + PP_0327 0.49 +0.3
393,881 - PP_0327 0.49 +1.0
393,979 + PP_0327 0.60 +1.1
393,979 + PP_0327 0.60 -0.4
393,980 - PP_0327 0.61 +0.5
393,980 - PP_0327 0.61 +1.2
393,981 + PP_0327 0.61 -0.4
393,981 + PP_0327 0.61 -0.5
393,981 + PP_0327 0.61 +0.8
393,982 - PP_0327 0.61 +1.7
393,982 - PP_0327 0.61 -0.2
393,982 - PP_0327 0.61 +0.6
393,989 + PP_0327 0.62 -0.3
393,989 + PP_0327 0.62 +0.3
394,036 - PP_0327 0.67 +0.2
394,036 - PP_0327 0.67 +0.2
394,079 - PP_0327 0.72 -0.3
394,090 + PP_0327 0.73 +0.6
394,129 + PP_0327 0.78 +0.6
394,129 + PP_0327 0.78 +0.0
394,129 + PP_0327 0.78 +0.7
394,129 + PP_0327 0.78 +2.4
394,129 + PP_0327 0.78 +0.0
394,129 + PP_0327 0.78 -0.8
394,129 + PP_0327 0.78 +1.4
394,129 + PP_0327 0.78 +0.3
394,130 - PP_0327 0.78 -0.5
394,130 - PP_0327 0.78 +0.6
394,130 - PP_0327 0.78 +0.6
394,316 - +0.0
394,316 - +0.9
394,355 + -0.1
394,355 + -1.1
394,361 + +0.8
394,361 + -0.7
394,361 + -0.3
394,361 + -0.6
394,396 - +0.1
394,450 + -1.6
394,451 - +0.4
394,451 - -1.1
394,476 - +0.5
394,508 + -0.3
394,592 + +0.2
394,592 + -0.3
394,612 + -0.0
394,612 + +0.3
394,613 - -0.8
394,643 + +0.6
394,669 - -0.8
394,683 - +1.6
394,792 + PP_0328 0.14 -0.2
394,792 + PP_0328 0.14 -0.2
394,792 + PP_0328 0.14 -0.1
394,793 - PP_0328 0.14 +0.7
394,793 - PP_0328 0.14 -0.7
394,988 + PP_0328 0.31 +0.5
394,988 + PP_0328 0.31 +0.3
394,988 + PP_0328 0.31 +0.0
395,033 + PP_0328 0.34 -0.4
395,033 + PP_0328 0.34 +0.5
395,033 + PP_0328 0.34 +0.6
395,034 - PP_0328 0.35 -0.4
395,189 + PP_0328 0.47 +0.0
395,189 + PP_0328 0.47 -0.3
395,189 + PP_0328 0.47 +0.1
395,189 + PP_0328 0.47 -0.5
395,189 + PP_0328 0.47 +1.8
395,190 - PP_0328 0.48 -2.7
395,190 - PP_0328 0.48 +1.1
395,259 + PP_0328 0.53 -1.4
395,260 - PP_0328 0.53 +0.0
395,260 - PP_0328 0.53 -0.4

Or see this region's nucleotide sequence