Experiment: diversity test of Keio_ML9a_ucsf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yagF and yagG are separated by 226 nucleotides yagG and yagH are separated by 11 nucleotides
b0269: yagF - CP4-6 prophage; predicted dehydratase (NCBI), at 282,425 to 284,392
yagF
b0270: yagG - CP4-6 prophage; predicted sugar transporter (NCBI), at 284,619 to 286,001
yagG
b0271: yagH - CP4-6 prophage; predicted xylosidase/arabinosidase (NCBI), at 286,013 to 287,623
yagH
Position (kb) 284
285
286
287 Strain fitness (log2 ratio) -1
0
1 at 283.731 kb on - strand, within yagF at 283.820 kb on + strand, within yagF at 283.835 kb on + strand, within yagF at 283.835 kb on + strand, within yagF at 284.022 kb on - strand, within yagF at 284.115 kb on - strand, within yagF at 284.150 kb on + strand, within yagF at 284.237 kb on + strand at 284.237 kb on + strand at 284.251 kb on - strand at 284.252 kb on + strand at 284.274 kb on + strand at 284.274 kb on + strand at 284.281 kb on + strand at 284.281 kb on + strand at 284.281 kb on + strand at 284.281 kb on + strand at 284.289 kb on - strand at 284.290 kb on - strand at 284.291 kb on + strand at 284.291 kb on + strand at 284.291 kb on + strand at 284.292 kb on - strand at 284.294 kb on - strand at 284.307 kb on + strand at 284.307 kb on + strand at 284.311 kb on - strand at 284.311 kb on - strand at 284.316 kb on + strand at 284.328 kb on + strand at 284.330 kb on + strand at 284.417 kb on + strand at 284.565 kb on + strand at 284.582 kb on - strand at 284.590 kb on - strand at 284.596 kb on + strand at 284.598 kb on + strand at 284.598 kb on + strand at 284.598 kb on + strand at 284.598 kb on + strand at 284.598 kb on + strand at 284.598 kb on + strand at 284.598 kb on + strand at 284.604 kb on - strand at 284.606 kb on - strand at 284.606 kb on - strand at 284.606 kb on - strand at 284.606 kb on - strand at 284.606 kb on - strand at 284.606 kb on - strand at 284.608 kb on - strand at 284.608 kb on - strand at 284.608 kb on - strand at 284.608 kb on - strand at 284.608 kb on - strand at 284.610 kb on + strand at 284.610 kb on + strand at 284.616 kb on - strand at 284.655 kb on + strand at 284.658 kb on - strand at 284.879 kb on + strand, within yagG at 284.879 kb on + strand, within yagG at 284.910 kb on + strand, within yagG at 284.938 kb on - strand, within yagG at 284.955 kb on + strand, within yagG at 284.975 kb on + strand, within yagG at 285.007 kb on - strand, within yagG at 285.007 kb on - strand, within yagG at 285.059 kb on - strand, within yagG at 285.190 kb on + strand, within yagG at 285.208 kb on - strand, within yagG at 285.246 kb on - strand, within yagG at 285.509 kb on + strand, within yagG at 285.528 kb on + strand, within yagG at 285.629 kb on + strand, within yagG at 285.706 kb on + strand, within yagG at 285.761 kb on - strand, within yagG at 285.761 kb on - strand, within yagG at 285.761 kb on - strand, within yagG at 285.818 kb on + strand, within yagG at 285.818 kb on + strand, within yagG at 286.103 kb on + strand at 286.108 kb on - strand at 286.119 kb on - strand at 286.119 kb on - strand at 286.341 kb on + strand, within yagH at 286.347 kb on - strand, within yagH at 286.351 kb on + strand, within yagH at 286.370 kb on - strand, within yagH at 286.533 kb on + strand, within yagH at 286.573 kb on - strand, within yagH at 286.655 kb on - strand, within yagH at 286.692 kb on + strand, within yagH at 286.692 kb on + strand, within yagH at 286.739 kb on + strand, within yagH at 286.789 kb on + strand, within yagH
Per-strain Table
Position Strand Gene LocusTag Fraction diversity test of Keio_ML9a_ucsf remove 283,731 - yagF b0269 0.66 -0.0 283,820 + yagF b0269 0.71 +0.1 283,835 + yagF b0269 0.72 +0.9 283,835 + yagF b0269 0.72 +0.1 284,022 - yagF b0269 0.81 +0.5 284,115 - yagF b0269 0.86 +0.2 284,150 + yagF b0269 0.88 +0.1 284,237 + +0.0 284,237 + -0.6 284,251 - -0.6 284,252 + -0.2 284,274 + -0.0 284,274 + +0.1 284,281 + -0.0 284,281 + -0.4 284,281 + -0.3 284,281 + -0.0 284,289 - -0.8 284,290 - -0.2 284,291 + -0.2 284,291 + -0.3 284,291 + -0.6 284,292 - -0.6 284,294 - -0.0 284,307 + -0.2 284,307 + -0.5 284,311 - +0.0 284,311 - -0.3 284,316 + +0.6 284,328 + +0.5 284,330 + +0.1 284,417 + +0.4 284,565 + +0.5 284,582 - -0.4 284,590 - -0.3 284,596 + +0.2 284,598 + +0.1 284,598 + -0.9 284,598 + +0.1 284,598 + +0.6 284,598 + -1.3 284,598 + -0.5 284,598 + -0.6 284,604 - -0.4 284,606 - +0.0 284,606 - +0.0 284,606 - -0.0 284,606 - +0.1 284,606 - -0.3 284,606 - -0.1 284,608 - +0.1 284,608 - -0.4 284,608 - -0.5 284,608 - +0.1 284,608 - -0.1 284,610 + +0.6 284,610 + +0.8 284,616 - +0.7 284,655 + +0.4 284,658 - +0.1 284,879 + yagG b0270 0.19 -0.2 284,879 + yagG b0270 0.19 -0.1 284,910 + yagG b0270 0.21 -1.6 284,938 - yagG b0270 0.23 -0.5 284,955 + yagG b0270 0.24 -0.2 284,975 + yagG b0270 0.26 -0.2 285,007 - yagG b0270 0.28 +0.1 285,007 - yagG b0270 0.28 -0.7 285,059 - yagG b0270 0.32 +0.2 285,190 + yagG b0270 0.41 -0.1 285,208 - yagG b0270 0.43 -0.3 285,246 - yagG b0270 0.45 -1.3 285,509 + yagG b0270 0.64 -0.5 285,528 + yagG b0270 0.66 -0.7 285,629 + yagG b0270 0.73 -0.2 285,706 + yagG b0270 0.79 +0.0 285,761 - yagG b0270 0.83 -0.3 285,761 - yagG b0270 0.83 -0.1 285,761 - yagG b0270 0.83 -1.1 285,818 + yagG b0270 0.87 +0.4 285,818 + yagG b0270 0.87 -0.2 286,103 + -0.2 286,108 - -0.3 286,119 - +0.0 286,119 - -0.1 286,341 + yagH b0271 0.20 -0.2 286,347 - yagH b0271 0.21 -0.5 286,351 + yagH b0271 0.21 +0.1 286,370 - yagH b0271 0.22 +0.2 286,533 + yagH b0271 0.32 -0.4 286,573 - yagH b0271 0.35 -0.5 286,655 - yagH b0271 0.40 -0.2 286,692 + yagH b0271 0.42 +0.4 286,692 + yagH b0271 0.42 -0.7 286,739 + yagH b0271 0.45 -0.2 286,789 + yagH b0271 0.48 -0.3
Or see this region's nucleotide sequence