Strain Fitness in Escherichia coli BW25113 around b4414
Experiment: BHIS no stress control; Dimethyl Sulfoxide 1 vol% 24 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | BHIS no stress control; Dimethyl Sulfoxide 1 vol% 24 hr |
|---|---|---|---|---|---|
| remove | |||||
| 188,717 | - | +0.5 | |||
| 188,751 | - | -1.2 | |||
| 189,542 | + | -0.6 | |||
| 189,542 | + | -2.3 | |||
| 189,548 | - | -0.6 | |||
| 189,572 | - | +0.4 | |||
| 189,573 | - | -0.6 | |||
| 189,580 | + | +0.1 | |||
| 189,580 | + | -0.1 | |||
| 189,614 | + | -0.4 | |||
| 189,614 | + | -0.4 | |||
| 189,651 | + | -0.1 | |||
| 189,653 | + | -0.3 | |||
| 189,653 | + | +0.3 | |||
| 189,653 | + | +0.1 | |||
| 189,653 | + | -0.9 | |||
| 189,653 | + | -0.6 | |||
| 189,653 | + | -0.1 | |||
| 189,653 | + | -0.6 | |||
| 189,653 | + | -0.6 | |||
| 189,661 | - | -0.9 | |||
| 189,661 | - | -0.1 | |||
| 189,661 | - | +0.4 | |||
| 189,740 | + | tff | b4414 | 0.21 | -2.0 |
| 189,740 | + | tff | b4414 | 0.21 | -0.6 |
| 189,740 | + | tff | b4414 | 0.21 | -0.8 |
| 189,744 | + | tff | b4414 | 0.24 | +0.1 |
| 189,758 | + | tff | b4414 | 0.34 | -4.2 |
| 190,524 | + | rpsB | b0169 | 0.90 | -1.0 |
| 190,524 | + | rpsB | b0169 | 0.90 | -0.4 |
| 190,524 | + | rpsB | b0169 | 0.90 | -2.2 |
| 190,594 | + | +0.5 | |||
| 190,605 | + | -0.2 | |||
| 190,605 | + | -0.6 | |||
| 190,605 | + | -1.0 | |||
| 190,605 | + | -1.8 | |||
| 190,689 | + | -0.1 | |||
| 190,744 | + | +0.5 | |||
| 190,769 | + | +0.0 | |||
| 190,777 | + | +0.4 | |||
| 190,778 | + | -1.3 | |||
| 190,778 | + | +0.1 |
Or see this region's nucleotide sequence