Strain Fitness in Escherichia coli BW25113 around b0400
Experiment: BHIS no stress control; Dimethyl Sulfoxide 1 vol% 24 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | BHIS no stress control; Dimethyl Sulfoxide 1 vol% 24 hr |
---|---|---|---|---|---|
remove | |||||
416,171 | + | +0.5 | |||
416,173 | + | -0.6 | |||
416,176 | - | -0.1 | |||
416,271 | - | +0.1 | |||
416,271 | - | -0.3 | |||
416,296 | - | +0.1 | |||
416,333 | - | -0.3 | |||
416,373 | + | +0.5 | |||
416,416 | + | +1.0 | |||
416,424 | - | +0.0 | |||
416,481 | - | phoB | b0399 | 0.17 | +0.1 |
416,481 | - | phoB | b0399 | 0.17 | -0.2 |
416,536 | - | phoB | b0399 | 0.25 | +0.2 |
416,562 | - | phoB | b0399 | 0.28 | -0.2 |
416,562 | - | phoB | b0399 | 0.28 | +0.3 |
416,654 | - | phoB | b0399 | 0.42 | +0.5 |
416,673 | - | phoB | b0399 | 0.44 | +0.2 |
416,676 | - | phoB | b0399 | 0.45 | +0.0 |
416,753 | - | -1.5 | |||
416,881 | + | phoB | b0399 | 0.75 | +0.3 |
416,937 | - | phoB | b0399 | 0.83 | +0.4 |
416,971 | + | phoB | b0399 | 0.88 | -0.0 |
416,990 | + | -0.6 | |||
416,993 | + | -0.4 | |||
417,003 | + | +0.2 | |||
417,008 | + | +0.7 | |||
417,015 | - | -0.0 | |||
417,015 | - | +0.3 | |||
417,015 | - | +0.1 | |||
417,016 | - | +2.5 | |||
417,022 | + | -0.5 | |||
417,076 | + | +0.2 | |||
417,076 | + | -0.0 | |||
417,091 | - | -0.0 | |||
417,144 | + | -1.9 | |||
417,174 | + | -0.4 | |||
417,270 | + | phoR | b0400 | 0.12 | +0.4 |
417,316 | - | phoR | b0400 | 0.16 | -1.6 |
417,389 | - | phoR | b0400 | 0.21 | -1.3 |
417,446 | + | phoR | b0400 | 0.26 | -2.3 |
417,446 | + | phoR | b0400 | 0.26 | -1.2 |
417,453 | - | phoR | b0400 | 0.26 | -1.0 |
417,538 | + | phoR | b0400 | 0.33 | +0.3 |
417,538 | + | phoR | b0400 | 0.33 | -2.0 |
417,541 | + | phoR | b0400 | 0.33 | -1.7 |
417,604 | + | phoR | b0400 | 0.38 | -0.9 |
417,616 | + | phoR | b0400 | 0.39 | -1.3 |
417,660 | - | phoR | b0400 | 0.42 | -0.7 |
417,660 | - | phoR | b0400 | 0.42 | -1.1 |
417,715 | - | phoR | b0400 | 0.46 | -1.5 |
417,715 | - | phoR | b0400 | 0.46 | -1.6 |
417,754 | - | phoR | b0400 | 0.49 | -1.1 |
417,754 | - | phoR | b0400 | 0.49 | -0.9 |
417,783 | + | phoR | b0400 | 0.52 | -2.1 |
417,889 | + | phoR | b0400 | 0.60 | -1.1 |
418,088 | + | phoR | b0400 | 0.75 | -1.1 |
418,096 | - | phoR | b0400 | 0.76 | -1.5 |
418,096 | - | phoR | b0400 | 0.76 | -1.6 |
418,144 | - | phoR | b0400 | 0.80 | -1.7 |
418,148 | + | phoR | b0400 | 0.80 | -1.4 |
418,175 | + | phoR | b0400 | 0.82 | -1.8 |
418,183 | - | phoR | b0400 | 0.83 | -2.8 |
418,183 | - | phoR | b0400 | 0.83 | -0.3 |
418,191 | + | phoR | b0400 | 0.83 | -0.7 |
418,191 | + | phoR | b0400 | 0.83 | -2.0 |
418,241 | + | phoR | b0400 | 0.87 | -1.3 |
418,283 | - | -1.7 | |||
418,327 | + | -1.4 | |||
418,333 | + | -1.5 | |||
418,333 | + | -1.4 | |||
418,336 | - | -1.4 | |||
418,346 | - | -1.6 | |||
418,423 | - | -0.0 | |||
418,611 | + | +0.9 | |||
418,658 | - | +0.2 | |||
418,794 | + | -0.5 | |||
418,856 | - | +0.2 | |||
418,899 | - | -0.3 | |||
418,899 | - | -0.1 | |||
418,915 | + | -0.5 | |||
418,942 | - | -0.1 | |||
418,949 | + | brnQ | b0401 | 0.10 | -1.7 |
418,969 | + | brnQ | b0401 | 0.12 | -0.2 |
418,992 | + | brnQ | b0401 | 0.13 | -0.5 |
419,112 | - | brnQ | b0401 | 0.23 | -0.3 |
419,153 | + | brnQ | b0401 | 0.26 | -0.2 |
419,195 | + | brnQ | b0401 | 0.29 | -0.2 |
419,243 | + | brnQ | b0401 | 0.32 | -0.2 |
419,249 | - | brnQ | b0401 | 0.33 | -0.5 |
419,263 | + | brnQ | b0401 | 0.34 | +0.5 |
419,263 | + | brnQ | b0401 | 0.34 | -0.5 |
419,308 | + | brnQ | b0401 | 0.37 | +0.3 |
419,328 | + | brnQ | b0401 | 0.39 | -0.2 |
419,404 | + | brnQ | b0401 | 0.45 | +0.8 |
Or see this region's nucleotide sequence