Experiment: M9 no stress control; Anaerobic 48 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rob and creA are separated by 210 nucleotides creA and creB are separated by 12 nucleotides creB and creC overlap by 1 nucleotides
b4396: rob - DNA-binding transcriptional activator (NCBI), at 4,632,464 to 4,633,333
rob
b4397: creA - hypothetical protein (NCBI), at 4,633,544 to 4,634,017
creA
b4398: creB - DNA-binding response regulator in two-component regulatory system with CreC (NCBI), at 4,634,030 to 4,634,719
creB
b4399: creC - sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon (NCBI), at 4,634,719 to 4,636,143
creC
Position (kb)
4633
4634
4635 Strain fitness (log2 ratio)
-1
0
1 at 4632.545 kb on - strand at 4632.550 kb on - strand at 4632.567 kb on - strand, within rob at 4632.569 kb on - strand, within rob at 4632.579 kb on - strand, within rob at 4632.583 kb on + strand, within rob at 4632.609 kb on - strand, within rob at 4632.650 kb on + strand, within rob at 4632.664 kb on - strand, within rob at 4632.664 kb on - strand, within rob at 4632.700 kb on + strand, within rob at 4632.708 kb on - strand, within rob at 4632.708 kb on - strand, within rob at 4632.805 kb on - strand, within rob at 4632.883 kb on + strand, within rob at 4632.883 kb on + strand, within rob at 4632.907 kb on + strand, within rob at 4632.910 kb on - strand, within rob at 4632.915 kb on - strand, within rob at 4632.915 kb on - strand, within rob at 4632.931 kb on + strand, within rob at 4632.932 kb on + strand, within rob at 4633.037 kb on + strand, within rob at 4633.037 kb on + strand, within rob at 4633.038 kb on - strand, within rob at 4633.089 kb on + strand, within rob at 4633.089 kb on + strand, within rob at 4633.102 kb on - strand, within rob at 4633.102 kb on - strand, within rob at 4633.193 kb on + strand, within rob at 4633.193 kb on + strand, within rob at 4633.193 kb on + strand, within rob at 4633.227 kb on - strand, within rob at 4633.227 kb on - strand, within rob at 4633.244 kb on - strand, within rob at 4633.274 kb on - strand at 4633.306 kb on - strand at 4633.317 kb on + strand at 4633.364 kb on - strand at 4633.367 kb on + strand at 4633.441 kb on - strand at 4633.445 kb on - strand at 4633.540 kb on - strand at 4633.602 kb on + strand, within creA at 4633.610 kb on - strand, within creA at 4633.621 kb on + strand, within creA at 4633.803 kb on + strand, within creA at 4633.871 kb on + strand, within creA at 4633.885 kb on + strand, within creA at 4633.888 kb on + strand, within creA at 4633.897 kb on - strand, within creA at 4633.942 kb on - strand, within creA at 4633.942 kb on - strand, within creA at 4634.001 kb on + strand at 4634.003 kb on + strand at 4634.232 kb on + strand, within creB at 4634.256 kb on + strand, within creB at 4634.274 kb on - strand, within creB at 4634.276 kb on + strand, within creB at 4634.318 kb on + strand, within creB at 4634.364 kb on + strand, within creB at 4634.376 kb on + strand, within creB at 4634.376 kb on + strand, within creB at 4634.381 kb on + strand, within creB at 4634.425 kb on - strand, within creB at 4634.446 kb on + strand, within creB at 4634.454 kb on - strand, within creB at 4634.506 kb on + strand, within creB at 4634.553 kb on - strand, within creB at 4634.588 kb on + strand, within creB at 4634.612 kb on + strand, within creB at 4634.637 kb on + strand, within creB at 4634.645 kb on - strand, within creB at 4634.674 kb on + strand at 4634.676 kb on + strand at 4634.676 kb on + strand at 4634.704 kb on + strand at 4634.711 kb on + strand at 4634.714 kb on + strand at 4634.716 kb on + strand at 4634.721 kb on - strand at 4634.721 kb on - strand at 4634.887 kb on - strand, within creC at 4634.894 kb on + strand, within creC at 4634.935 kb on - strand, within creC at 4634.935 kb on - strand, within creC at 4634.943 kb on + strand, within creC at 4634.943 kb on + strand, within creC at 4634.946 kb on - strand, within creC at 4635.008 kb on - strand, within creC
Per-strain Table
Position Strand Gene LocusTag Fraction M9 no stress control; Anaerobic 48 hr remove 4,632,545 - +0.2 4,632,550 - -0.4 4,632,567 - rob b4396 0.12 +0.3 4,632,569 - rob b4396 0.12 -0.8 4,632,579 - rob b4396 0.13 +0.4 4,632,583 + rob b4396 0.14 +0.6 4,632,609 - rob b4396 0.17 +0.1 4,632,650 + rob b4396 0.21 +0.2 4,632,664 - rob b4396 0.23 +0.4 4,632,664 - rob b4396 0.23 -0.1 4,632,700 + rob b4396 0.27 +0.5 4,632,708 - rob b4396 0.28 +0.5 4,632,708 - rob b4396 0.28 +0.3 4,632,805 - rob b4396 0.39 -0.2 4,632,883 + rob b4396 0.48 +0.6 4,632,883 + rob b4396 0.48 +1.0 4,632,907 + rob b4396 0.51 -0.1 4,632,910 - rob b4396 0.51 +0.0 4,632,915 - rob b4396 0.52 -0.1 4,632,915 - rob b4396 0.52 +0.1 4,632,931 + rob b4396 0.54 +0.4 4,632,932 + rob b4396 0.54 +1.2 4,633,037 + rob b4396 0.66 -0.4 4,633,037 + rob b4396 0.66 +0.7 4,633,038 - rob b4396 0.66 +0.8 4,633,089 + rob b4396 0.72 -0.2 4,633,089 + rob b4396 0.72 +0.4 4,633,102 - rob b4396 0.73 +0.5 4,633,102 - rob b4396 0.73 +0.1 4,633,193 + rob b4396 0.84 +0.4 4,633,193 + rob b4396 0.84 -0.1 4,633,193 + rob b4396 0.84 +0.9 4,633,227 - rob b4396 0.88 +0.3 4,633,227 - rob b4396 0.88 +0.5 4,633,244 - rob b4396 0.90 +0.2 4,633,274 - +0.5 4,633,306 - +0.7 4,633,317 + +0.6 4,633,364 - -0.1 4,633,367 + +1.1 4,633,441 - -0.3 4,633,445 - -0.6 4,633,540 - -0.4 4,633,602 + creA b4397 0.12 +0.6 4,633,610 - creA b4397 0.14 -0.7 4,633,621 + creA b4397 0.16 -0.3 4,633,803 + creA b4397 0.55 +0.3 4,633,871 + creA b4397 0.69 +0.1 4,633,885 + creA b4397 0.72 +1.3 4,633,888 + creA b4397 0.73 +0.3 4,633,897 - creA b4397 0.74 +0.4 4,633,942 - creA b4397 0.84 +0.1 4,633,942 - creA b4397 0.84 +0.5 4,634,001 + +0.1 4,634,003 + -0.2 4,634,232 + creB b4398 0.29 -0.1 4,634,256 + creB b4398 0.33 -0.2 4,634,274 - creB b4398 0.35 +0.3 4,634,276 + creB b4398 0.36 +0.0 4,634,318 + creB b4398 0.42 -0.9 4,634,364 + creB b4398 0.48 -0.4 4,634,376 + creB b4398 0.50 +0.4 4,634,376 + creB b4398 0.50 -0.2 4,634,381 + creB b4398 0.51 +0.1 4,634,425 - creB b4398 0.57 -0.4 4,634,446 + creB b4398 0.60 +0.3 4,634,454 - creB b4398 0.61 +1.0 4,634,506 + creB b4398 0.69 -0.2 4,634,553 - creB b4398 0.76 -0.1 4,634,588 + creB b4398 0.81 -0.1 4,634,612 + creB b4398 0.84 +0.0 4,634,637 + creB b4398 0.88 -0.4 4,634,645 - creB b4398 0.89 +0.5 4,634,674 + +0.4 4,634,676 + -0.1 4,634,676 + -0.0 4,634,704 + +0.2 4,634,711 + +0.2 4,634,714 + -0.8 4,634,716 + +0.1 4,634,721 - +0.1 4,634,721 - +0.1 4,634,887 - creC b4399 0.12 +0.1 4,634,894 + creC b4399 0.12 +0.3 4,634,935 - creC b4399 0.15 +0.4 4,634,935 - creC b4399 0.15 +0.3 4,634,943 + creC b4399 0.16 -0.1 4,634,943 + creC b4399 0.16 -0.2 4,634,946 - creC b4399 0.16 -0.3 4,635,008 - creC b4399 0.20 +0.3
Or see this region's nucleotide sequence