Experiment: M9 no stress control; Anaerobic 48 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt radC and dfp are separated by 171 nucleotides dfp and dut overlap by 20 nucleotides dut and ttk are separated by 106 nucleotides
b3638: radC - DNA repair protein (VIMSS), at 3,809,914 to 3,810,582
radC
b3639: dfp - flavoprotein affecting synthesis of DNA and pantothenate metabolism (VIMSS), at 3,810,754 to 3,811,974
dfp
b3640: dut - deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI), at 3,811,955 to 3,812,410
dut
b3641: ttk - putative transcriptional regulator (VIMSS), at 3,812,517 to 3,813,113
ttk
Position (kb)
3810
3811
3812 Strain fitness (log2 ratio)
-1
0
1
2 at 3809.790 kb on - strand at 3809.851 kb on - strand at 3809.851 kb on - strand at 3809.852 kb on - strand at 3809.867 kb on + strand at 3810.048 kb on + strand, within radC at 3810.048 kb on + strand, within radC at 3810.053 kb on - strand, within radC at 3810.053 kb on - strand, within radC at 3810.053 kb on - strand, within radC at 3810.062 kb on + strand, within radC at 3810.063 kb on + strand, within radC at 3810.072 kb on + strand, within radC at 3810.080 kb on - strand, within radC at 3810.080 kb on - strand, within radC at 3810.087 kb on - strand, within radC at 3810.087 kb on - strand, within radC at 3810.087 kb on - strand, within radC at 3810.267 kb on + strand, within radC at 3810.267 kb on + strand, within radC at 3810.285 kb on - strand, within radC at 3810.317 kb on + strand, within radC at 3810.338 kb on + strand, within radC at 3810.346 kb on - strand, within radC at 3810.369 kb on + strand, within radC at 3810.462 kb on - strand, within radC at 3810.464 kb on + strand, within radC at 3810.464 kb on + strand, within radC at 3810.470 kb on - strand, within radC at 3810.482 kb on - strand, within radC at 3810.555 kb on + strand at 3810.564 kb on + strand at 3810.619 kb on + strand at 3810.729 kb on - strand at 3812.407 kb on + strand at 3812.413 kb on - strand at 3812.413 kb on - strand at 3812.424 kb on + strand at 3812.567 kb on + strand at 3812.567 kb on + strand at 3812.604 kb on - strand, within ttk at 3812.662 kb on + strand, within ttk at 3812.662 kb on + strand, within ttk at 3812.700 kb on - strand, within ttk at 3812.700 kb on - strand, within ttk at 3812.759 kb on + strand, within ttk at 3812.759 kb on + strand, within ttk at 3812.816 kb on + strand, within ttk at 3812.821 kb on + strand, within ttk at 3812.824 kb on - strand, within ttk at 3812.860 kb on + strand at 3812.873 kb on - strand, within ttk at 3812.883 kb on - strand, within ttk at 3812.883 kb on - strand, within ttk at 3812.957 kb on + strand, within ttk at 3812.963 kb on + strand, within ttk at 3812.963 kb on + strand, within ttk at 3812.971 kb on - strand, within ttk
Per-strain Table
Position Strand Gene LocusTag Fraction M9 no stress control; Anaerobic 48 hr remove 3,809,790 - +1.1 3,809,851 - +0.5 3,809,851 - -0.1 3,809,852 - +2.2 3,809,867 + +0.3 3,810,048 + radC b3638 0.20 +0.0 3,810,048 + radC b3638 0.20 -0.4 3,810,053 - radC b3638 0.21 -0.1 3,810,053 - radC b3638 0.21 -0.2 3,810,053 - radC b3638 0.21 -0.3 3,810,062 + radC b3638 0.22 -0.2 3,810,063 + radC b3638 0.22 -0.1 3,810,072 + radC b3638 0.24 -0.8 3,810,080 - radC b3638 0.25 +0.2 3,810,080 - radC b3638 0.25 +0.2 3,810,087 - radC b3638 0.26 -0.6 3,810,087 - radC b3638 0.26 -0.5 3,810,087 - radC b3638 0.26 +0.2 3,810,267 + radC b3638 0.53 -0.1 3,810,267 + radC b3638 0.53 -0.4 3,810,285 - radC b3638 0.55 +0.4 3,810,317 + radC b3638 0.60 -0.1 3,810,338 + radC b3638 0.63 +0.2 3,810,346 - radC b3638 0.65 -0.1 3,810,369 + radC b3638 0.68 -0.5 3,810,462 - radC b3638 0.82 -0.1 3,810,464 + radC b3638 0.82 +0.4 3,810,464 + radC b3638 0.82 -0.2 3,810,470 - radC b3638 0.83 -0.2 3,810,482 - radC b3638 0.85 -0.2 3,810,555 + +0.1 3,810,564 + +0.2 3,810,619 + -1.2 3,810,729 - -0.5 3,812,407 + +0.6 3,812,413 - +1.0 3,812,413 - +0.4 3,812,424 + -1.0 3,812,567 + +0.2 3,812,567 + +0.7 3,812,604 - ttk b3641 0.15 +0.0 3,812,662 + ttk b3641 0.24 +0.2 3,812,662 + ttk b3641 0.24 +1.0 3,812,700 - ttk b3641 0.31 +0.0 3,812,700 - ttk b3641 0.31 +0.2 3,812,759 + ttk b3641 0.41 -0.3 3,812,759 + ttk b3641 0.41 +0.1 3,812,816 + ttk b3641 0.50 +0.5 3,812,821 + ttk b3641 0.51 +0.1 3,812,824 - ttk b3641 0.51 -0.1 3,812,860 + +1.7 3,812,873 - ttk b3641 0.60 +0.4 3,812,883 - ttk b3641 0.61 +0.9 3,812,883 - ttk b3641 0.61 +0.0 3,812,957 + ttk b3641 0.74 -0.2 3,812,963 + ttk b3641 0.75 -0.2 3,812,963 + ttk b3641 0.75 +0.3 3,812,971 - ttk b3641 0.76 +0.1
Or see this region's nucleotide sequence