Experiment: M9 no stress control; Anaerobic 48 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydeQ and ydeR are separated by 58 nucleotides ydeR and ydeS are separated by 12 nucleotides ydeS and ydeT are separated by 13 nucleotides
b1502: ydeQ - predicted fimbrial-like adhesin protein (NCBI), at 1,584,844 to 1,585,758
ydeQ
b1503: ydeR - predicted fimbrial-like adhesin protein (NCBI), at 1,585,817 to 1,586,320
ydeR
b1504: ydeS - predicted fimbrial-like adhesin protein (NCBI), at 1,586,333 to 1,586,863
ydeS
b1505: ydeT - hypothetical protein (RefSeq), at 1,586,877 to 1,588,103
ydeT
Position (kb)
1585
1586
1587 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1584.838 kb on - strand at 1584.993 kb on - strand, within ydeQ at 1585.024 kb on - strand, within ydeQ at 1585.026 kb on - strand, within ydeQ at 1585.054 kb on - strand, within ydeQ at 1585.490 kb on - strand, within ydeQ at 1585.490 kb on - strand, within ydeQ at 1585.490 kb on - strand, within ydeQ at 1585.490 kb on - strand, within ydeQ at 1585.872 kb on - strand, within ydeR at 1585.981 kb on - strand, within ydeR at 1586.062 kb on - strand, within ydeR at 1586.062 kb on - strand, within ydeR at 1586.105 kb on - strand, within ydeR at 1586.172 kb on + strand, within ydeR at 1586.187 kb on + strand, within ydeR at 1586.200 kb on - strand, within ydeR at 1586.200 kb on - strand, within ydeR at 1586.210 kb on - strand, within ydeR at 1586.217 kb on - strand, within ydeR at 1586.239 kb on - strand, within ydeR at 1586.245 kb on - strand, within ydeR at 1586.252 kb on + strand, within ydeR at 1586.260 kb on - strand, within ydeR at 1586.364 kb on + strand at 1586.372 kb on - strand at 1586.408 kb on - strand, within ydeS at 1586.415 kb on + strand, within ydeS at 1586.415 kb on + strand, within ydeS at 1586.415 kb on + strand, within ydeS at 1586.415 kb on + strand, within ydeS at 1586.415 kb on + strand, within ydeS at 1586.458 kb on + strand, within ydeS at 1586.589 kb on + strand, within ydeS at 1586.659 kb on + strand, within ydeS at 1586.748 kb on + strand, within ydeS at 1586.914 kb on - strand at 1587.007 kb on - strand, within ydeT at 1587.161 kb on - strand, within ydeT at 1587.206 kb on - strand, within ydeT
Per-strain Table
Position Strand Gene LocusTag Fraction M9 no stress control; Anaerobic 48 hr remove 1,584,838 - +1.0 1,584,993 - ydeQ b1502 0.16 -0.1 1,585,024 - ydeQ b1502 0.20 -0.0 1,585,026 - ydeQ b1502 0.20 +1.0 1,585,054 - ydeQ b1502 0.23 +1.6 1,585,490 - ydeQ b1502 0.71 -1.0 1,585,490 - ydeQ b1502 0.71 +1.0 1,585,490 - ydeQ b1502 0.71 -2.3 1,585,490 - ydeQ b1502 0.71 +1.0 1,585,872 - ydeR b1503 0.11 +0.1 1,585,981 - ydeR b1503 0.33 +0.1 1,586,062 - ydeR b1503 0.49 -0.7 1,586,062 - ydeR b1503 0.49 +0.3 1,586,105 - ydeR b1503 0.57 +1.0 1,586,172 + ydeR b1503 0.70 +0.6 1,586,187 + ydeR b1503 0.73 -0.6 1,586,200 - ydeR b1503 0.76 +1.4 1,586,200 - ydeR b1503 0.76 +2.4 1,586,210 - ydeR b1503 0.78 +1.0 1,586,217 - ydeR b1503 0.79 -0.0 1,586,239 - ydeR b1503 0.84 -0.2 1,586,245 - ydeR b1503 0.85 -0.3 1,586,252 + ydeR b1503 0.86 -1.4 1,586,260 - ydeR b1503 0.88 +0.3 1,586,364 + +0.2 1,586,372 - -0.8 1,586,408 - ydeS b1504 0.14 +1.6 1,586,415 + ydeS b1504 0.15 -0.2 1,586,415 + ydeS b1504 0.15 -0.3 1,586,415 + ydeS b1504 0.15 +0.0 1,586,415 + ydeS b1504 0.15 +0.2 1,586,415 + ydeS b1504 0.15 -0.1 1,586,458 + ydeS b1504 0.24 +0.3 1,586,589 + ydeS b1504 0.48 +1.0 1,586,659 + ydeS b1504 0.61 +1.0 1,586,748 + ydeS b1504 0.78 +2.0 1,586,914 - +1.0 1,587,007 - ydeT b1505 0.11 +1.0 1,587,161 - ydeT b1505 0.23 -0.2 1,587,206 - ydeT b1505 0.27 +2.6
Or see this region's nucleotide sequence