Experiment: M9 no stress control; Anaerobic 48 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ltaE and poxB are separated by 36 nucleotides poxB and hcr are separated by 132 nucleotides
b0870: ltaE - L-allo-threonine aldolase, PLP-dependent (NCBI), at 907,516 to 908,517
ltaE
b0871: poxB - pyruvate dehydrogenase (NCBI), at 908,554 to 910,272
poxB
b0872: hcr - HCP oxidoreductase, NADH-dependent (NCBI), at 910,405 to 911,373
hcr
Position (kb) 908
909
910
911 Strain fitness (log2 ratio) -2
-1
0
1 at 908.109 kb on + strand, within ltaE at 908.179 kb on - strand, within ltaE at 908.192 kb on - strand, within ltaE at 908.220 kb on + strand, within ltaE at 908.235 kb on + strand, within ltaE at 908.314 kb on + strand, within ltaE at 908.337 kb on + strand, within ltaE at 908.403 kb on - strand, within ltaE at 908.461 kb on - strand at 908.493 kb on + strand at 908.493 kb on + strand at 908.513 kb on + strand at 908.626 kb on + strand at 908.626 kb on + strand at 908.794 kb on + strand, within poxB at 908.819 kb on + strand, within poxB at 908.939 kb on + strand, within poxB at 909.025 kb on - strand, within poxB at 909.025 kb on - strand, within poxB at 909.079 kb on - strand at 909.134 kb on + strand, within poxB at 909.142 kb on + strand, within poxB at 909.183 kb on + strand, within poxB at 909.183 kb on + strand, within poxB at 909.465 kb on - strand, within poxB at 909.465 kb on - strand, within poxB at 909.579 kb on + strand, within poxB at 909.587 kb on - strand, within poxB at 909.647 kb on + strand, within poxB at 909.726 kb on - strand, within poxB at 909.748 kb on + strand, within poxB at 909.756 kb on - strand, within poxB at 909.848 kb on - strand, within poxB at 909.850 kb on - strand, within poxB at 909.868 kb on - strand, within poxB at 909.874 kb on + strand, within poxB at 909.874 kb on + strand, within poxB at 909.880 kb on - strand, within poxB at 910.173 kb on + strand at 910.173 kb on + strand at 910.181 kb on - strand at 910.181 kb on - strand at 910.214 kb on + strand at 910.215 kb on + strand at 910.215 kb on + strand at 910.292 kb on - strand at 910.293 kb on + strand at 910.343 kb on - strand at 910.452 kb on - strand at 910.452 kb on - strand at 910.738 kb on + strand, within hcr at 910.816 kb on - strand, within hcr at 910.826 kb on - strand at 911.125 kb on - strand, within hcr at 911.167 kb on - strand, within hcr
Per-strain Table
Position Strand Gene LocusTag Fraction M9 no stress control; Anaerobic 48 hr remove 908,109 + ltaE b0870 0.59 +0.0 908,179 - ltaE b0870 0.66 +0.1 908,192 - ltaE b0870 0.67 -0.7 908,220 + ltaE b0870 0.70 -0.0 908,235 + ltaE b0870 0.72 +0.2 908,314 + ltaE b0870 0.80 -0.1 908,337 + ltaE b0870 0.82 +0.0 908,403 - ltaE b0870 0.89 -0.4 908,461 - +0.1 908,493 + +0.3 908,493 + +0.2 908,513 + +0.1 908,626 + +0.1 908,626 + +0.9 908,794 + poxB b0871 0.14 +0.8 908,819 + poxB b0871 0.15 +0.5 908,939 + poxB b0871 0.22 +0.3 909,025 - poxB b0871 0.27 +0.9 909,025 - poxB b0871 0.27 +0.6 909,079 - -1.0 909,134 + poxB b0871 0.34 -0.0 909,142 + poxB b0871 0.34 -0.2 909,183 + poxB b0871 0.37 -0.4 909,183 + poxB b0871 0.37 +0.3 909,465 - poxB b0871 0.53 +0.7 909,465 - poxB b0871 0.53 +0.2 909,579 + poxB b0871 0.60 +0.1 909,587 - poxB b0871 0.60 +0.1 909,647 + poxB b0871 0.64 -0.2 909,726 - poxB b0871 0.68 -0.3 909,748 + poxB b0871 0.69 -0.4 909,756 - poxB b0871 0.70 -0.1 909,848 - poxB b0871 0.75 +0.5 909,850 - poxB b0871 0.75 +1.2 909,868 - poxB b0871 0.76 +0.3 909,874 + poxB b0871 0.77 +0.0 909,874 + poxB b0871 0.77 +0.3 909,880 - poxB b0871 0.77 +0.5 910,173 + -0.3 910,173 + +0.1 910,181 - -0.3 910,181 - -0.0 910,214 + -0.6 910,215 + +0.4 910,215 + -0.2 910,292 - +0.6 910,293 + -0.1 910,343 - +0.1 910,452 - -0.2 910,452 - +0.5 910,738 + hcr b0872 0.34 +0.4 910,816 - hcr b0872 0.42 -0.1 910,826 - -1.8 911,125 - hcr b0872 0.74 -0.4 911,167 - hcr b0872 0.79 -0.3
Or see this region's nucleotide sequence