Strain Fitness in Escherichia coli BW25113 around b3192

Experiment: BHIS with Methotrexate 1.98 mM 48 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Methotrexate 1.98 mM 48 hr
3,334,619	-	yrbA	b3190	0.19	+0.0
3,334,630	+	yrbA	b3190	0.23	+0.7
3,334,638	-	yrbA	b3190	0.26	+0.2
3,334,638	-	yrbA	b3190	0.26	-0.1
3,334,639	+	yrbA	b3190	0.27	+0.4
3,334,639	+	yrbA	b3190	0.27	-0.1
3,334,710	-	yrbA	b3190	0.55	+0.1
3,334,718	+	yrbA	b3190	0.58	+1.0
3,334,724	+	yrbA	b3190	0.60	-0.4
3,334,780	-	yrbA	b3190	0.82	+0.3
3,334,780	-	yrbA	b3190	0.82	-0.3
3,334,793	+	yrbA	b3190	0.87	-0.1
3,334,801	-				-0.4
3,334,801	-				+0.9
3,334,843	+				+0.2
3,334,883	+				+0.1
3,334,918	+				-0.1
3,334,918	+				+0.1
3,335,030	+	yrbB	b3191	0.15	-0.2
3,335,030	+	yrbB	b3191	0.15	+0.1
3,335,030	+	yrbB	b3191	0.15	+0.4
3,335,030	+	yrbB	b3191	0.15	+1.0
3,335,030	+	yrbB	b3191	0.15	+0.3
3,335,030	+	yrbB	b3191	0.15	+0.0
3,335,031	+	yrbB	b3191	0.16	-0.1
3,335,031	+	yrbB	b3191	0.16	-0.4
3,335,036	+	yrbB	b3191	0.17	-0.1
3,335,036	+	yrbB	b3191	0.17	+0.2
3,335,038	-	yrbB	b3191	0.18	+1.0
3,335,038	-	yrbB	b3191	0.18	+0.7
3,335,038	-	yrbB	b3191	0.18	+0.3
3,335,038	-	yrbB	b3191	0.18	+0.3
3,335,038	-	yrbB	b3191	0.18	+0.5
3,335,059	-	yrbB	b3191	0.25	+0.0
3,335,060	-	yrbB	b3191	0.26	+0.3
3,335,098	+	yrbB	b3191	0.38	+1.0
3,335,098	+	yrbB	b3191	0.38	+0.4
3,335,102	+	yrbB	b3191	0.40	+0.3
3,335,102	+	yrbB	b3191	0.40	+0.5
3,335,120	+	yrbB	b3191	0.46	+0.2
3,335,128	-	yrbB	b3191	0.49	+0.4
3,335,137	+	yrbB	b3191	0.52	+0.1
3,335,142	+	yrbB	b3191	0.53	+0.9
3,335,142	+	yrbB	b3191	0.53	+0.3
3,335,162	-	yrbB	b3191	0.60	+0.3
3,335,165	+	yrbB	b3191	0.61	+0.5
3,335,198	+	yrbB	b3191	0.72	-0.4
3,335,198	+	yrbB	b3191	0.72	+0.1
3,335,205	+	yrbB	b3191	0.75	+0.6
3,335,236	-	yrbB	b3191	0.85	-0.8
3,335,340	+				-0.4
3,335,362	-	yrbC	b3192	0.13	+0.7
3,335,362	-	yrbC	b3192	0.13	+0.1
3,335,404	+	yrbC	b3192	0.20	+0.8
3,335,428	-	yrbC	b3192	0.24	+0.9
3,335,428	-	yrbC	b3192	0.24	+0.8
3,335,461	+	yrbC	b3192	0.29	-1.8
3,335,481	+	yrbC	b3192	0.32	+0.5
3,335,500	+	yrbC	b3192	0.35	+0.3
3,335,500	+	yrbC	b3192	0.35	+0.5
3,335,547	+	yrbC	b3192	0.42	+0.7
3,335,581	-	yrbC	b3192	0.48	+1.3
3,335,581	-	yrbC	b3192	0.48	+1.2
3,335,583	-	yrbC	b3192	0.48	+0.3
3,335,627	-	yrbC	b3192	0.55	+0.5
3,335,627	-	yrbC	b3192	0.55	+1.6
3,335,649	+	yrbC	b3192	0.58	+0.6
3,335,655	+	yrbC	b3192	0.59	+0.4
3,335,655	+	yrbC	b3192	0.59	-0.1
3,335,663	+	yrbC	b3192	0.61	+0.1
3,335,665	+	yrbC	b3192	0.61	+0.6
3,335,666	+	yrbC	b3192	0.61	+0.8
3,335,674	-	yrbC	b3192	0.62	+0.7
3,335,674	-				+0.3
3,335,674	-	yrbC	b3192	0.62	+0.5
3,335,674	-	yrbC	b3192	0.62	-0.1
3,335,674	-	yrbC	b3192	0.62	-0.1
3,335,680	-	yrbC	b3192	0.63	+0.7
3,335,680	-	yrbC	b3192	0.63	-0.1
3,335,682	+	yrbC	b3192	0.64	+0.1
3,335,682	+	yrbC	b3192	0.64	+0.7
3,335,711	+	yrbC	b3192	0.68	+0.3
3,335,730	+	yrbC	b3192	0.71	+0.2
3,335,732	-	yrbC	b3192	0.71	+0.6
3,335,732	-	yrbC	b3192	0.71	+0.4
3,335,732	-	yrbC	b3192	0.71	+0.4
3,335,825	+	yrbC	b3192	0.86	+0.8
3,335,827	-	yrbC	b3192	0.86	+0.2
3,335,827	-	yrbC	b3192	0.86	+0.6
3,335,833	-	yrbC	b3192	0.87	+0.4
3,335,838	-	yrbC	b3192	0.88	+0.0
3,335,847	-	yrbC	b3192	0.89	+0.8
3,335,953	-				+0.0
3,336,026	+	yrbD	b3193	0.17	-0.8
3,336,052	+	yrbD	b3193	0.22	+0.3
3,336,052	+	yrbD	b3193	0.22	+0.8
3,336,068	+	yrbD	b3193	0.25	+0.4
3,336,097	+	yrbD	b3193	0.30	+0.5
3,336,110	-	yrbD	b3193	0.32	+0.4
3,336,158	+	yrbD	b3193	0.41	+0.4
3,336,163	+	yrbD	b3193	0.42	+0.8
3,336,173	+	yrbD	b3193	0.44	+1.4
3,336,173	+	yrbD	b3193	0.44	+1.1
3,336,199	-	yrbD	b3193	0.48	+0.7
3,336,209	-	yrbD	b3193	0.50	+0.2
3,336,267	+	yrbD	b3193	0.61	+1.1
3,336,271	+	yrbD	b3193	0.61	+0.7
3,336,286	+	yrbD	b3193	0.64	+0.4
3,336,294	-	yrbD	b3193	0.66	+0.6
3,336,294	-	yrbD	b3193	0.66	+0.6
3,336,294	-	yrbD	b3193	0.66	+0.8
3,336,308	-	yrbD	b3193	0.68	+0.9
3,336,332	+	yrbD	b3193	0.72	-0.1
3,336,340	-	yrbD	b3193	0.74	+0.4
3,336,362	+	yrbD	b3193	0.78	+0.6
3,336,362	-	yrbD	b3193	0.78	+0.2
3,336,367	+	yrbD	b3193	0.79	+1.0
3,336,377	+	yrbD	b3193	0.81	+0.8
3,336,380	-	yrbD	b3193	0.81	+0.5
3,336,380	-	yrbD	b3193	0.81	-0.1
3,336,385	-	yrbD	b3193	0.82	+0.0
3,336,387	-	yrbD	b3193	0.82	+0.4
3,336,402	+	yrbD	b3193	0.85	-0.8
3,336,440	-				+0.2
3,336,440	-				+0.3
3,336,445	+				+0.1
3,336,445	+				+1.1
3,336,453	-				+0.6
3,336,453	-				+0.2
3,336,526	+				+0.3
3,336,619	+	yrbE	b3194	0.17	+0.4
3,336,619	-	yrbE	b3194	0.17	-4.8
3,336,636	+	yrbE	b3194	0.19	+0.8
3,336,636	+	yrbE	b3194	0.19	+0.4
3,336,666	-				-2.3
3,336,669	-	yrbE	b3194	0.23	-1.9
3,336,678	+	yrbE	b3194	0.24	+0.3
3,336,678	+	yrbE	b3194	0.24	+0.2
3,336,711	+	yrbE	b3194	0.28	+0.3
3,336,711	+	yrbE	b3194	0.28	+0.7
3,336,736	+	yrbE	b3194	0.32	-0.0
3,336,773	-	yrbE	b3194	0.36	-1.9
3,336,800	-	yrbE	b3194	0.40	-3.7
3,336,804	+	yrbE	b3194	0.40	+0.4
3,336,810	+	yrbE	b3194	0.41	+1.5
3,336,822	+	yrbE	b3194	0.43	+2.5
3,336,827	+	yrbE	b3194	0.43	+0.2
3,336,853	+	yrbE	b3194	0.47	+0.3
3,336,879	+	yrbE	b3194	0.50	+0.9
3,336,879	+	yrbE	b3194	0.50	+1.3
3,336,887	-	yrbE	b3194	0.51	-1.6
3,336,894	+	yrbE	b3194	0.52	+0.3
3,336,894	+	yrbE	b3194	0.52	+1.2
3,336,902	+	yrbE	b3194	0.53	+0.3
3,336,902	+	yrbE	b3194	0.53	+0.4
3,336,910	-	yrbE	b3194	0.54	-0.5
3,336,910	-	yrbE	b3194	0.54	-2.5