Strain Fitness in Escherichia coli BW25113 around b1363

Experiment: BHIS with Methotrexate 1.98 mM 48 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Methotrexate 1.98 mM 48 hr
1,420,831	-	ydaW	b1361	0.21	+0.9
1,421,276	-	rzpR	b1362	0.11	-0.4
1,421,536	+				+0.6
1,421,536	+				-0.2
1,421,602	+				-1.4
1,421,612	+	rzpR	b1362	0.87	-0.8
1,421,612	+	rzpR	b1362	0.87	+1.0
1,421,623	+	rzpR	b1362	0.90	-0.0
1,421,623	+	rzpR	b1362	0.90	-1.1
1,421,638	+				+0.8
1,421,638	+				+0.1
1,421,641	+				+0.2
1,421,672	+				+0.3
1,421,672	+				-0.0
1,421,813	+				+0.7
1,421,838	+				-0.0
1,421,838	+				-0.5
1,421,841	+				+0.5
1,421,841	+				-0.1
1,421,846	+				-0.6
1,421,847	+				-1.0
1,421,848	+				-0.2
1,421,848	+				+0.4
1,421,859	+				+1.4
1,421,875	+				-0.3
1,421,891	+				-0.3
1,421,895	+				+0.0
1,421,983	+	trkG	b1363	0.12	+1.3
1,422,251	+	trkG	b1363	0.31	+1.3
1,422,251	+	trkG	b1363	0.31	+1.3
1,422,308	-	trkG	b1363	0.34	+1.3
1,422,353	+	trkG	b1363	0.38	-0.7
1,422,475	+	trkG	b1363	0.46	+2.3
1,422,846	+	trkG	b1363	0.71	+1.3
1,422,986	+	trkG	b1363	0.81	+2.3
1,423,139	+				+1.3
1,423,141	+				-0.3
1,423,185	+				+1.5
1,423,263	+				+1.3
1,423,330	-				+1.3
1,423,353	+				+1.3
1,423,358	-				+1.3
1,423,441	+	ynaK	b1365	0.15	-0.3
1,423,470	-	ynaK	b1365	0.26	-0.2
1,423,470	-	ynaK	b1365	0.26	-0.6
1,423,472	+	ynaK	b1365	0.27	+2.6
1,423,472	+	ynaK	b1365	0.27	-0.1
1,423,477	+	ynaK	b1365	0.29	+1.3
1,423,477	+	ynaK	b1365	0.29	+0.6
1,423,477	+	ynaK	b1365	0.29	+1.7
1,423,477	+	ynaK	b1365	0.29	+0.3
1,423,477	+	ynaK	b1365	0.29	+0.7
1,423,477	+	ynaK	b1365	0.29	+0.3
1,423,480	-	ynaK	b1365	0.30	-0.6
1,423,480	-	ynaK	b1365	0.30	+1.7
1,423,480	-	ynaK	b1365	0.30	-1.3
1,423,480	-	ynaK	b1365	0.30	-0.4
1,423,480	-	ynaK	b1365	0.30	+0.3
1,423,480	-	ynaK	b1365	0.30	-1.1
1,423,482	-	ynaK	b1365	0.31	-0.5
1,423,485	-	ynaK	b1365	0.32	-0.2
1,423,485	-	ynaK	b1365	0.32	-0.1
1,423,485	-	ynaK	b1365	0.32	+0.5
1,423,485	-	ynaK	b1365	0.32	+2.4
1,423,485	-	ynaK	b1365	0.32	+0.5
1,423,485	-	ynaK	b1365	0.32	-0.5
1,423,485	-	ynaK	b1365	0.32	-1.3
1,423,485	-	ynaK	b1365	0.32	+0.0
1,423,485	-	ynaK	b1365	0.32	+0.2
1,423,485	-	ynaK	b1365	0.32	-0.4
1,423,485	-	ynaK	b1365	0.32	+0.1
1,423,485	-	ynaK	b1365	0.32	-0.4
1,423,485	-	ynaK	b1365	0.32	-0.2
1,423,485	-	ynaK	b1365	0.32	-0.4
1,423,485	-	ynaK	b1365	0.32	+0.6
1,423,485	-	ynaK	b1365	0.32	+0.1
1,423,490	-	ynaK	b1365	0.34	+0.4
1,423,507	+	ynaK	b1365	0.40	-0.5
1,423,507	-	ynaK	b1365	0.40	-0.3
1,423,539	-	ynaK	b1365	0.52	-1.1
1,423,577	-	ynaK	b1365	0.67	-0.5
1,423,584	-	ynaK	b1365	0.69	+0.7
1,423,632	-	ynaK	b1365	0.88	+0.1
1,423,632	-	ynaK	b1365	0.88	-1.0
1,423,661	+				+0.2
1,423,664	-				+0.3
1,423,902	+	ydaY	b1366	0.55	+0.8
1,423,902	+	ydaY	b1366	0.55	+0.9
1,423,902	+	ydaY	b1366	0.55	+1.8
1,423,937	+	ydaY	b1366	0.62	-0.8
1,423,957	+	ydaY	b1366	0.67	+0.1
1,423,962	+	ydaY	b1366	0.68	+0.0
1,423,962	+	ydaY	b1366	0.68	+0.6
1,423,962	+	ydaY	b1366	0.68	-0.0
1,424,115	+				-0.2
1,424,126	+				+0.5
1,424,126	+				-0.5
1,424,159	+				-0.2
1,424,197	+				+0.2
1,424,234	+				+0.5
1,424,262	+				-0.2