Experiment: M9 no stress control; Anaerobic 24 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cusS and cusR overlap by 11 nucleotides cusR and cusC are separated by 156 nucleotides cusC and cusF are separated by 157 nucleotides cusF and cusB are separated by 15 nucleotides
b0570: cusS - sensory histidine kinase in two-component regulatory system with CusR, senses copper ions (NCBI), at 592,551 to 593,993
cusS
b0571: cusR - DNA-binding response regulator in two-component regulatory system with CusS (NCBI), at 593,983 to 594,666
cusR
b0572: cusC - copper/silver efflux system, outer membrane component (NCBI), at 594,823 to 596,196
cusC
b0573: cusF - periplasmic copper-binding protein (NCBI), at 596,354 to 596,686
cusF
b0574: cusB - copper/silver efflux system, membrane fusion protein (NCBI), at 596,702 to 597,925
cusB
Position (kb) 594
595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 593.887 kb on + strand at 594.000 kb on + strand at 594.000 kb on + strand at 594.001 kb on + strand at 594.001 kb on - strand at 594.149 kb on - strand, within cusR at 594.149 kb on - strand, within cusR at 594.200 kb on - strand, within cusR at 594.200 kb on - strand, within cusR at 594.209 kb on - strand, within cusR at 594.209 kb on - strand, within cusR at 594.219 kb on - strand, within cusR at 594.219 kb on - strand, within cusR at 594.343 kb on - strand, within cusR at 594.460 kb on - strand, within cusR at 594.460 kb on - strand, within cusR at 594.474 kb on - strand, within cusR at 594.515 kb on - strand, within cusR at 594.557 kb on + strand, within cusR at 594.557 kb on + strand, within cusR at 594.723 kb on - strand at 594.743 kb on - strand at 594.895 kb on - strand at 594.952 kb on - strand at 595.041 kb on + strand, within cusC at 595.125 kb on + strand, within cusC at 595.213 kb on + strand, within cusC at 595.239 kb on + strand, within cusC at 595.239 kb on + strand, within cusC at 595.239 kb on + strand, within cusC at 595.247 kb on - strand, within cusC at 595.251 kb on + strand, within cusC at 595.251 kb on + strand, within cusC at 595.253 kb on + strand, within cusC at 595.294 kb on - strand, within cusC at 595.361 kb on - strand, within cusC at 595.361 kb on - strand, within cusC at 595.405 kb on - strand, within cusC at 595.409 kb on + strand, within cusC at 595.459 kb on - strand, within cusC at 595.478 kb on - strand, within cusC at 595.480 kb on - strand, within cusC at 595.481 kb on - strand, within cusC at 595.481 kb on - strand, within cusC at 595.487 kb on + strand, within cusC at 595.488 kb on - strand, within cusC at 595.495 kb on - strand, within cusC at 595.495 kb on - strand, within cusC at 595.516 kb on - strand, within cusC at 595.533 kb on + strand, within cusC at 595.533 kb on + strand, within cusC at 595.584 kb on + strand, within cusC at 595.592 kb on + strand, within cusC at 595.592 kb on + strand, within cusC at 595.592 kb on - strand, within cusC at 595.594 kb on + strand, within cusC at 595.597 kb on + strand, within cusC at 595.686 kb on + strand, within cusC at 595.705 kb on + strand, within cusC at 595.710 kb on + strand, within cusC at 595.742 kb on + strand, within cusC at 595.747 kb on + strand, within cusC at 595.774 kb on + strand, within cusC at 595.774 kb on + strand, within cusC at 595.775 kb on + strand, within cusC at 595.775 kb on + strand, within cusC at 595.886 kb on - strand, within cusC at 595.886 kb on - strand, within cusC at 595.900 kb on + strand, within cusC at 595.900 kb on + strand, within cusC at 595.909 kb on + strand, within cusC at 595.909 kb on + strand, within cusC at 595.911 kb on + strand, within cusC at 595.917 kb on - strand, within cusC at 595.917 kb on - strand, within cusC at 595.961 kb on - strand, within cusC at 595.966 kb on + strand, within cusC at 595.970 kb on - strand, within cusC at 595.973 kb on + strand, within cusC at 595.973 kb on - strand, within cusC at 595.987 kb on + strand, within cusC at 596.015 kb on - strand, within cusC at 596.017 kb on - strand, within cusC at 596.032 kb on + strand, within cusC at 596.066 kb on + strand at 596.068 kb on + strand at 596.134 kb on - strand at 596.167 kb on + strand at 596.174 kb on + strand at 596.175 kb on - strand at 596.200 kb on - strand at 596.200 kb on - strand at 596.207 kb on - strand at 596.207 kb on - strand at 596.207 kb on - strand at 596.207 kb on - strand at 596.207 kb on - strand at 596.210 kb on - strand at 596.229 kb on - strand at 596.232 kb on - strand at 596.234 kb on - strand at 596.234 kb on - strand at 596.237 kb on - strand at 596.237 kb on - strand at 596.238 kb on - strand at 596.238 kb on - strand at 596.254 kb on - strand at 596.254 kb on - strand at 596.276 kb on + strand at 596.285 kb on + strand at 596.292 kb on + strand at 596.389 kb on + strand, within cusF at 596.396 kb on - strand, within cusF at 596.397 kb on - strand, within cusF at 596.397 kb on - strand, within cusF at 596.404 kb on - strand, within cusF at 596.411 kb on + strand, within cusF at 596.428 kb on - strand, within cusF at 596.456 kb on - strand, within cusF at 596.461 kb on - strand, within cusF at 596.469 kb on + strand, within cusF at 596.480 kb on - strand, within cusF at 596.480 kb on - strand, within cusF at 596.480 kb on - strand, within cusF at 596.486 kb on - strand, within cusF at 596.490 kb on - strand, within cusF at 596.490 kb on - strand, within cusF at 596.490 kb on - strand, within cusF at 596.491 kb on - strand, within cusF at 596.529 kb on - strand, within cusF at 596.537 kb on - strand, within cusF at 596.537 kb on - strand, within cusF at 596.540 kb on + strand, within cusF at 596.540 kb on + strand, within cusF at 596.540 kb on + strand, within cusF at 596.540 kb on + strand, within cusF at 596.540 kb on + strand, within cusF at 596.540 kb on + strand, within cusF at 596.540 kb on + strand, within cusF at 596.540 kb on + strand, within cusF at 596.548 kb on - strand, within cusF at 596.548 kb on - strand, within cusF at 596.548 kb on - strand, within cusF at 596.548 kb on - strand, within cusF at 596.548 kb on - strand, within cusF at 596.548 kb on - strand, within cusF at 596.548 kb on - strand, within cusF at 596.548 kb on - strand, within cusF at 596.548 kb on - strand, within cusF at 596.550 kb on + strand, within cusF at 596.550 kb on + strand, within cusF at 596.550 kb on + strand, within cusF at 596.555 kb on + strand, within cusF at 596.558 kb on - strand, within cusF at 596.563 kb on - strand, within cusF at 596.568 kb on + strand, within cusF at 596.568 kb on + strand, within cusF at 596.574 kb on + strand, within cusF at 596.574 kb on + strand, within cusF at 596.574 kb on - strand, within cusF at 596.576 kb on - strand, within cusF at 596.576 kb on - strand, within cusF at 596.582 kb on - strand, within cusF at 596.634 kb on + strand, within cusF at 596.634 kb on - strand, within cusF at 596.634 kb on - strand, within cusF at 596.634 kb on - strand, within cusF at 596.667 kb on + strand at 596.686 kb on + strand at 596.686 kb on + strand at 596.686 kb on + strand at 596.694 kb on - strand at 596.694 kb on - strand at 596.699 kb on - strand at 596.699 kb on - strand at 596.736 kb on - strand at 596.736 kb on - strand at 596.753 kb on - strand at 596.770 kb on - strand at 596.770 kb on - strand at 596.770 kb on - strand at 596.782 kb on + strand at 596.811 kb on + strand at 596.811 kb on + strand at 596.830 kb on + strand, within cusB at 596.840 kb on + strand, within cusB at 596.841 kb on + strand, within cusB at 596.848 kb on - strand, within cusB at 596.849 kb on - strand, within cusB at 596.853 kb on - strand, within cusB at 596.854 kb on - strand, within cusB at 596.895 kb on + strand, within cusB at 597.043 kb on + strand, within cusB at 597.043 kb on + strand, within cusB at 597.051 kb on - strand, within cusB at 597.079 kb on - strand, within cusB at 597.084 kb on + strand, within cusB at 597.154 kb on - strand, within cusB at 597.154 kb on - strand, within cusB at 597.157 kb on - strand, within cusB at 597.157 kb on - strand, within cusB at 597.192 kb on + strand, within cusB
Per-strain Table
Position Strand Gene LocusTag Fraction M9 no stress control; Anaerobic 24 hr remove 593,887 + -0.5 594,000 + -0.7 594,000 + -1.4 594,001 + -0.6 594,001 - -0.6 594,149 - cusR b0571 0.24 +0.3 594,149 - cusR b0571 0.24 +0.1 594,200 - cusR b0571 0.32 -0.6 594,200 - cusR b0571 0.32 -2.1 594,209 - cusR b0571 0.33 -1.3 594,209 - cusR b0571 0.33 +0.1 594,219 - cusR b0571 0.35 -0.3 594,219 - cusR b0571 0.35 -0.5 594,343 - cusR b0571 0.53 -0.7 594,460 - cusR b0571 0.70 -0.6 594,460 - cusR b0571 0.70 -0.7 594,474 - cusR b0571 0.72 +0.2 594,515 - cusR b0571 0.78 -0.7 594,557 + cusR b0571 0.84 -0.2 594,557 + cusR b0571 0.84 -0.3 594,723 - +0.1 594,743 - -0.1 594,895 - -0.8 594,952 - -0.2 595,041 + cusC b0572 0.16 -0.4 595,125 + cusC b0572 0.22 -0.8 595,213 + cusC b0572 0.28 -0.7 595,239 + cusC b0572 0.30 +0.1 595,239 + cusC b0572 0.30 +0.4 595,239 + cusC b0572 0.30 -0.5 595,247 - cusC b0572 0.31 -1.6 595,251 + cusC b0572 0.31 +0.1 595,251 + cusC b0572 0.31 -0.1 595,253 + cusC b0572 0.31 -0.4 595,294 - cusC b0572 0.34 -0.4 595,361 - cusC b0572 0.39 -0.7 595,361 - cusC b0572 0.39 -0.4 595,405 - cusC b0572 0.42 -0.6 595,409 + cusC b0572 0.43 -0.3 595,459 - cusC b0572 0.46 -0.3 595,478 - cusC b0572 0.48 -0.9 595,480 - cusC b0572 0.48 -0.0 595,481 - cusC b0572 0.48 +1.0 595,481 - cusC b0572 0.48 -0.6 595,487 + cusC b0572 0.48 -0.3 595,488 - cusC b0572 0.48 -0.7 595,495 - cusC b0572 0.49 -0.1 595,495 - cusC b0572 0.49 -1.3 595,516 - cusC b0572 0.50 -0.7 595,533 + cusC b0572 0.52 -1.7 595,533 + cusC b0572 0.52 -0.7 595,584 + cusC b0572 0.55 -0.6 595,592 + cusC b0572 0.56 -0.5 595,592 + cusC b0572 0.56 -0.6 595,592 - cusC b0572 0.56 -1.0 595,594 + cusC b0572 0.56 -0.6 595,597 + cusC b0572 0.56 -0.8 595,686 + cusC b0572 0.63 -0.8 595,705 + cusC b0572 0.64 -0.4 595,710 + cusC b0572 0.65 -0.4 595,742 + cusC b0572 0.67 -1.3 595,747 + cusC b0572 0.67 +0.2 595,774 + cusC b0572 0.69 -0.4 595,774 + cusC b0572 0.69 +0.2 595,775 + cusC b0572 0.69 -0.0 595,775 + cusC b0572 0.69 +0.8 595,886 - cusC b0572 0.77 -2.2 595,886 - cusC b0572 0.77 -0.9 595,900 + cusC b0572 0.78 -1.2 595,900 + cusC b0572 0.78 -0.2 595,909 + cusC b0572 0.79 -0.2 595,909 + cusC b0572 0.79 -0.5 595,911 + cusC b0572 0.79 -0.2 595,917 - cusC b0572 0.80 +0.8 595,917 - cusC b0572 0.80 -1.8 595,961 - cusC b0572 0.83 -0.4 595,966 + cusC b0572 0.83 -0.2 595,970 - cusC b0572 0.83 +0.3 595,973 + cusC b0572 0.84 -1.9 595,973 - cusC b0572 0.84 -0.1 595,987 + cusC b0572 0.85 -0.3 596,015 - cusC b0572 0.87 +0.4 596,017 - cusC b0572 0.87 +0.5 596,032 + cusC b0572 0.88 -0.5 596,066 + -1.4 596,068 + -0.7 596,134 - -0.0 596,167 + +0.7 596,174 + -0.6 596,175 - -0.6 596,200 - -0.3 596,200 - -0.0 596,207 - -1.3 596,207 - +0.2 596,207 - -0.0 596,207 - -0.2 596,207 - -0.2 596,210 - -0.7 596,229 - +0.3 596,232 - -1.0 596,234 - +0.3 596,234 - -0.2 596,237 - -1.5 596,237 - -0.2 596,238 - -3.3 596,238 - -1.3 596,254 - +0.4 596,254 - +0.4 596,276 + -0.3 596,285 + +0.1 596,292 + -0.1 596,389 + cusF b0573 0.11 +1.3 596,396 - cusF b0573 0.13 -1.3 596,397 - cusF b0573 0.13 +0.1 596,397 - cusF b0573 0.13 -0.2 596,404 - cusF b0573 0.15 -0.4 596,411 + cusF b0573 0.17 -0.7 596,428 - cusF b0573 0.22 -0.4 596,456 - cusF b0573 0.31 -0.2 596,461 - cusF b0573 0.32 -0.5 596,469 + cusF b0573 0.35 -0.0 596,480 - cusF b0573 0.38 -0.8 596,480 - cusF b0573 0.38 -0.2 596,480 - cusF b0573 0.38 -0.8 596,486 - cusF b0573 0.40 -0.7 596,490 - cusF b0573 0.41 -1.9 596,490 - cusF b0573 0.41 -1.5 596,490 - cusF b0573 0.41 -0.1 596,491 - cusF b0573 0.41 -0.5 596,529 - cusF b0573 0.53 -1.3 596,537 - cusF b0573 0.55 -0.2 596,537 - cusF b0573 0.55 -1.3 596,540 + cusF b0573 0.56 +0.0 596,540 + cusF b0573 0.56 -0.4 596,540 + cusF b0573 0.56 +0.5 596,540 + cusF b0573 0.56 -0.3 596,540 + cusF b0573 0.56 -0.4 596,540 + cusF b0573 0.56 +0.3 596,540 + cusF b0573 0.56 -0.3 596,540 + cusF b0573 0.56 -1.4 596,548 - cusF b0573 0.58 -0.2 596,548 - cusF b0573 0.58 +0.1 596,548 - cusF b0573 0.58 -0.0 596,548 - cusF b0573 0.58 -0.2 596,548 - cusF b0573 0.58 -1.3 596,548 - cusF b0573 0.58 +0.3 596,548 - cusF b0573 0.58 -0.4 596,548 - cusF b0573 0.58 -0.1 596,548 - cusF b0573 0.58 +0.3 596,550 + cusF b0573 0.59 -0.6 596,550 + cusF b0573 0.59 -0.4 596,550 + cusF b0573 0.59 +0.1 596,555 + cusF b0573 0.60 -0.6 596,558 - cusF b0573 0.61 -0.6 596,563 - cusF b0573 0.63 -0.8 596,568 + cusF b0573 0.64 +0.1 596,568 + cusF b0573 0.64 -0.3 596,574 + cusF b0573 0.66 -0.3 596,574 + cusF b0573 0.66 -0.3 596,574 - cusF b0573 0.66 -0.6 596,576 - cusF b0573 0.67 -1.8 596,576 - cusF b0573 0.67 +0.2 596,582 - cusF b0573 0.68 -0.4 596,634 + cusF b0573 0.84 -0.3 596,634 - cusF b0573 0.84 +0.8 596,634 - cusF b0573 0.84 -0.7 596,634 - cusF b0573 0.84 -0.3 596,667 + -0.5 596,686 + -0.0 596,686 + -0.1 596,686 + -0.6 596,694 - -0.3 596,694 - -0.4 596,699 - -0.4 596,699 - -1.2 596,736 - -0.0 596,736 - -0.4 596,753 - -0.7 596,770 - -0.5 596,770 - -0.4 596,770 - -0.7 596,782 + -0.6 596,811 + +0.7 596,811 + -0.2 596,830 + cusB b0574 0.10 -1.5 596,840 + cusB b0574 0.11 -1.7 596,841 + cusB b0574 0.11 +0.2 596,848 - cusB b0574 0.12 -2.9 596,849 - cusB b0574 0.12 -0.7 596,853 - cusB b0574 0.12 -1.0 596,854 - cusB b0574 0.12 -0.3 596,895 + cusB b0574 0.16 +0.0 597,043 + cusB b0574 0.28 +0.6 597,043 + cusB b0574 0.28 -0.6 597,051 - cusB b0574 0.29 -0.7 597,079 - cusB b0574 0.31 +0.2 597,084 + cusB b0574 0.31 -1.2 597,154 - cusB b0574 0.37 +0.3 597,154 - cusB b0574 0.37 -0.8 597,157 - cusB b0574 0.37 -1.5 597,157 - cusB b0574 0.37 +0.2 597,192 + cusB b0574 0.40 -0.4
Or see this region's nucleotide sequence