Strain Fitness in Escherichia coli BW25113 around b3512

Experiment: BHIS with Methotrexate 0.1 mM 48 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Methotrexate 0.1 mM 48 hr
3,655,397	+	hdeD	b3511	0.66	-0.8
3,655,398	-	hdeD	b3511	0.66	+0.5
3,655,400	-	hdeD	b3511	0.67	+0.4
3,655,400	-	hdeD	b3511	0.67	-1.5
3,655,402	-	hdeD	b3511	0.67	+0.5
3,655,407	-	hdeD	b3511	0.68	-0.0
3,655,407	-	hdeD	b3511	0.68	-0.2
3,655,411	+	hdeD	b3511	0.69	+0.3
3,655,411	+	hdeD	b3511	0.69	+0.2
3,655,412	-	hdeD	b3511	0.69	-0.9
3,655,421	+	hdeD	b3511	0.70	-0.7
3,655,421	+	hdeD	b3511	0.70	-0.5
3,655,424	+	hdeD	b3511	0.71	-0.5
3,655,424	+	hdeD	b3511	0.71	+0.2
3,655,424	+	hdeD	b3511	0.71	+0.4
3,655,424	+	hdeD	b3511	0.71	-0.0
3,655,424	+	hdeD	b3511	0.71	+0.2
3,655,424	+	hdeD	b3511	0.71	+0.6
3,655,429	-	hdeD	b3511	0.72	-1.3
3,655,429	-	hdeD	b3511	0.72	+0.9
3,655,431	-	hdeD	b3511	0.72	-0.7
3,655,432	-	hdeD	b3511	0.72	-0.4
3,655,432	-	hdeD	b3511	0.72	+1.4
3,655,434	+	hdeD	b3511	0.73	+0.4
3,655,434	+	hdeD	b3511	0.73	+0.7
3,655,434	+	hdeD	b3511	0.73	+0.3
3,655,436	+	hdeD	b3511	0.73	+0.0
3,655,436	+	hdeD	b3511	0.73	+1.4
3,655,436	+	hdeD	b3511	0.73	+0.3
3,655,436	+	hdeD	b3511	0.73	+1.4
3,655,436	+	hdeD	b3511	0.73	+0.8
3,655,436	+	hdeD	b3511	0.73	+0.2
3,655,436	+	hdeD	b3511	0.73	+0.8
3,655,436	+	hdeD	b3511	0.73	+0.0
3,655,442	-	hdeD	b3511	0.74	+0.7
3,655,442	-	hdeD	b3511	0.74	+0.3
3,655,444	+	hdeD	b3511	0.74	+0.4
3,655,444	-	hdeD	b3511	0.74	+0.2
3,655,444	-	hdeD	b3511	0.74	+0.5
3,655,444	-	hdeD	b3511	0.74	+0.6
3,655,444	-	hdeD	b3511	0.74	+0.5
3,655,444	-	hdeD	b3511	0.74	-0.1
3,655,445	+	hdeD	b3511	0.75	-0.3
3,655,445	+	hdeD	b3511	0.75	-0.1
3,655,446	+	hdeD	b3511	0.75	+0.3
3,655,452	-	hdeD	b3511	0.76	+0.2
3,655,453	-	hdeD	b3511	0.76	+0.1
3,655,454	-	hdeD	b3511	0.76	-1.6
3,655,454	-	hdeD	b3511	0.76	+0.2
3,655,461	+	hdeD	b3511	0.77	+0.2
3,655,466	+	hdeD	b3511	0.78	-0.3
3,655,475	-	hdeD	b3511	0.80	+0.2
3,655,486	-	hdeD	b3511	0.82	+0.6
3,655,489	+	hdeD	b3511	0.82	-2.7
3,655,489	+	hdeD	b3511	0.82	-2.9
3,655,491	+	hdeD	b3511	0.83	+0.4
3,655,491	+	hdeD	b3511	0.83	+0.8
3,655,491	+	hdeD	b3511	0.83	+1.0
3,655,491	+	hdeD	b3511	0.83	+1.5
3,655,491	+	hdeD	b3511	0.83	+0.9
3,655,492	+	hdeD	b3511	0.83	-0.2
3,655,492	+	hdeD	b3511	0.83	-0.3
3,655,492	+	hdeD	b3511	0.83	-0.0
3,655,492	-	hdeD	b3511	0.83	-0.3
3,655,493	+	hdeD	b3511	0.83	+0.3
3,655,493	+	hdeD	b3511	0.83	-0.2
3,655,493	+	hdeD	b3511	0.83	+0.4
3,655,493	+	hdeD	b3511	0.83	+0.5
3,655,493	+	hdeD	b3511	0.83	+0.0
3,655,493	+	hdeD	b3511	0.83	+0.2
3,655,493	+	hdeD	b3511	0.83	+0.6
3,655,493	+	hdeD	b3511	0.83	+0.3
3,655,493	+	hdeD	b3511	0.83	+0.7
3,655,493	+	hdeD	b3511	0.83	+0.3
3,655,494	+	hdeD	b3511	0.83	+1.5
3,655,496	+	hdeD	b3511	0.83	+0.0
3,655,496	+	hdeD	b3511	0.83	-0.1
3,655,496	+	hdeD	b3511	0.83	+0.6
3,655,496	+	hdeD	b3511	0.83	+0.7
3,655,496	+	hdeD	b3511	0.83	+1.1
3,655,496	+	hdeD	b3511	0.83	-0.5
3,655,496	+	hdeD	b3511	0.83	+0.5
3,655,496	-	hdeD	b3511	0.83	+2.2
3,655,496	-	hdeD	b3511	0.83	+1.2
3,655,499	-	hdeD	b3511	0.84	-0.1
3,655,499	-	hdeD	b3511	0.84	+0.5
3,655,500	-	hdeD	b3511	0.84	-1.1
3,655,501	+	hdeD	b3511	0.84	+0.5
3,655,501	+	hdeD	b3511	0.84	-0.2
3,655,501	-	hdeD	b3511	0.84	-0.6
3,655,501	-	hdeD	b3511	0.84	+1.2
3,655,501	-	hdeD	b3511	0.84	-1.3
3,655,502	-	hdeD	b3511	0.84	-0.3
3,655,502	-	hdeD	b3511	0.84	-1.4
3,655,504	-	hdeD	b3511	0.85	-0.9
3,655,506	+	hdeD	b3511	0.85	+0.3
3,655,508	+	hdeD	b3511	0.86	-1.0
3,655,514	-	hdeD	b3511	0.87	-0.1
3,655,516	+	hdeD	b3511	0.87	-0.6
3,655,516	-	hdeD	b3511	0.87	+0.8
3,655,516	-	hdeD	b3511	0.87	+0.4
3,655,518	+	hdeD	b3511	0.87	+0.1
3,655,521	-	hdeD	b3511	0.88	+0.2
3,655,523	+	hdeD	b3511	0.88	+0.7
3,655,549	+				-0.8
3,655,549	+				+0.5
3,655,549	+				+0.5
3,655,549	+				+0.5
3,655,549	+				-0.5
3,655,549	+				+0.0
3,655,552	+				-0.1
3,655,557	-				+2.0
3,655,557	-				-0.1
3,655,557	-				+1.0
3,655,562	-				-0.1
3,655,566	-				+0.6
3,655,567	-				-0.4
3,655,579	+				+0.3
3,655,590	-				-0.8
3,655,605	+				+0.9
3,655,607	-				-0.0
3,655,610	+				+0.2
3,655,610	+				-0.4
3,655,611	-				+0.0
3,655,615	+				-0.6
3,655,615	+				-0.2
3,655,615	+				-0.1
3,655,615	+				+1.5
3,655,617	+				-0.8
3,655,618	-				+1.2
3,655,619	+				-0.8
3,655,621	+				-0.4
3,655,621	+				+1.5
3,655,623	+				+0.6
3,655,623	-				+1.2
3,655,623	-				+1.2
3,655,623	-				+1.2
3,655,638	-				+1.2
3,655,640	+				+0.6
3,655,652	+				+1.4
3,655,657	-				+1.2
3,655,657	-				-1.1
3,655,659	+				+1.0
3,655,660	-				-1.6
3,655,664	-				+0.6
3,655,667	-				+0.5
3,655,667	-				+0.4
3,655,669	+				-1.2
3,655,678	-				+0.5
3,655,680	-				+0.6
3,655,680	-				-0.8
3,655,680	-				+1.5
3,655,696	+				-0.3
3,655,696	+				+0.9
3,655,696	+				+0.3
3,655,760	+				-0.0
3,655,771	+				-1.4
3,655,771	+				+0.6
3,655,816	-				+1.0
3,655,821	+				-0.1
3,655,829	+				-0.2
3,655,829	+				+0.4
3,655,829	+				-0.2
3,655,837	-				+1.3
3,655,839	+				-0.7
3,655,839	+				-0.2
3,655,848	+				+0.4
3,655,858	+				+0.2
3,655,860	+				+1.2
3,655,863	+				+0.3
3,655,863	+				-1.1
3,655,863	+				-0.9
3,655,863	+				+0.0
3,655,864	+				+0.4
3,655,865	+				-1.1
3,655,870	+				+0.0
3,655,914	+				+0.3
3,655,916	+				+0.4
3,655,916	+				-0.5
3,655,917	+				-1.4
3,655,917	+				+1.0
3,655,926	+				+0.3
3,655,926	+				-0.4
3,655,926	+				-0.6
3,655,926	+				-0.1
3,655,942	+				-0.2
3,655,942	+				+0.9
3,655,942	+				-0.2
3,655,951	+				-0.2
3,655,951	+				+0.9
3,655,951	+				-0.2
3,656,005	+				+2.2
3,656,028	+	arrS	b4704	0.28	+1.2
3,656,028	+	arrS	b4704	0.28	+1.2
3,656,114	-				+0.7
3,656,128	-				+0.7
3,656,136	-				+1.2
3,656,150	-				-0.5
3,656,182	-				+0.2
3,656,183	-				-0.4
3,656,184	+				+1.2
3,656,189	+				+1.2
3,656,192	-				+1.2
3,656,209	+				-0.8
3,656,215	+				+0.7
3,656,710	+	GadE	b3512	0.61	+1.2
3,656,710	+	GadE	b3512	0.61	+1.2
3,656,710	+	GadE	b3512	0.61	+1.2
3,656,710	+	GadE	b3512	0.61	+1.2
3,656,792	+	GadE	b3512	0.76	+1.2
3,656,792	+	GadE	b3512	0.76	+1.2
3,656,832	-	GadE	b3512	0.84	+0.4
3,656,848	+	GadE	b3512	0.87	+1.2
3,656,858	-	GadE	b3512	0.89	+1.1
3,656,871	+				+0.2
3,656,872	+				+1.2
3,656,872	+				+1.3
3,656,880	-				+1.5
3,656,880	-				+0.6
3,656,880	-				+0.8
3,656,880	-				+1.3
3,656,885	+				-0.4
3,656,885	+				+1.2
3,656,885	+				+2.2
3,656,886	-				+0.7
3,656,895	+				+0.6
3,656,895	+				+1.0
3,656,903	-				+0.7
3,656,904	-				+2.2
3,656,920	+				+1.2
3,656,923	+				+1.2
3,656,923	+				+1.2
3,656,928	-				+0.1
3,656,939	-				+0.1
3,656,939	-				+0.6
3,656,948	+				-0.4
3,656,949	+				-1.1
3,656,952	+				-0.4
3,656,953	+				+0.1
3,656,957	+				+0.8
3,656,958	+				+0.7
3,656,960	+				-0.0
3,656,961	+				+0.3
3,656,966	-				+0.8
3,656,966	-				+1.2
3,656,992	+				+0.6
3,656,992	+				+1.0
3,656,992	+				+1.2
3,656,997	+				+0.2
3,656,997	+				+0.4
3,657,000	-				+0.3
3,657,000	-				+0.7
3,657,003	-				+0.7
3,657,012	-				+0.9
3,657,022	-				+0.2
3,657,027	+				-1.1
3,657,032	+				-0.3
3,657,039	+				+0.4
3,657,039	+				+0.1
3,657,039	+				+1.9
3,657,053	+				+1.3
3,657,072	+				+0.5
3,657,122	-				+0.8
3,657,125	-				+0.3
3,657,131	+				-0.7
3,657,131	-				-0.2
3,657,147	+				+0.2
3,657,149	-				+0.4
3,657,168	-				+0.1
3,657,199	-				+0.0
3,657,285	+				-0.1
3,657,295	-				+0.7
3,657,387	-	mdtE	b3513	0.11	+0.3
3,657,448	+	mdtE	b3513	0.17	-0.2
3,657,453	+	mdtE	b3513	0.17	+0.5
3,657,456	-	mdtE	b3513	0.17	+0.1
3,657,456	-	mdtE	b3513	0.17	+0.2
3,657,463	+	mdtE	b3513	0.18	+0.0
3,657,552	+	mdtE	b3513	0.26	-0.3
3,657,552	+	mdtE	b3513	0.26	-0.3
3,657,560	-	mdtE	b3513	0.26	-0.1
3,657,560	-	mdtE	b3513	0.26	+0.4
3,657,560	-	mdtE	b3513	0.26	-0.0
3,657,560	-	mdtE	b3513	0.26	-0.1
3,657,604	-	mdtE	b3513	0.30	+0.1
3,657,604	-	mdtE	b3513	0.30	+0.1
3,657,646	-	mdtE	b3513	0.34	+0.1
3,657,674	-	mdtE	b3513	0.36	+0.5
3,657,707	+	mdtE	b3513	0.39	-0.0
3,657,853	+	mdtE	b3513	0.52	+0.4
3,657,853	+	mdtE	b3513	0.52	+0.2
3,657,853	+	mdtE	b3513	0.52	+0.1
3,657,908	-	mdtE	b3513	0.56	+0.1
3,657,908	-	mdtE	b3513	0.56	+0.9