Strain Fitness in Escherichia coli BW25113 around b4173

Experiment: M9 with Methotrexate 1.98 mM 24 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Methotrexate 1.98 mM 24 hr
4,397,704	-	miaA	b4171	0.45	-0.9
4,397,763	-	miaA	b4171	0.51	+1.1
4,397,845	-	miaA	b4171	0.60	+1.1
4,397,853	+	miaA	b4171	0.61	+2.1
4,397,856	+	miaA	b4171	0.61	+0.2
4,397,866	+	miaA	b4171	0.62	-1.7
4,397,922	+	miaA	b4171	0.68	+0.4
4,397,935	+	miaA	b4171	0.69	+0.9
4,397,935	+	miaA	b4171	0.69	-0.5
4,398,137	+				+0.5
4,398,137	+				-1.4
4,398,156	+				-0.2
4,398,233	+				+0.3
4,398,233	+				-1.4
4,398,433	+	hfq	b4172	0.39	+1.1
4,398,562	+	hfq	b4172	0.81	+0.1
4,398,565	+	hfq	b4172	0.82	-0.5
4,398,593	+				+0.1
4,398,668	-				-0.9
4,398,675	-				-0.2
4,398,677	+				+0.3
4,398,677	+				-0.8
4,398,703	+				-0.3
4,398,714	+				-0.2
4,398,724	-				+0.4
4,398,728	+				+0.8
4,398,728	+				-0.7
4,398,793	+				+0.3
4,398,815	-				-0.1
4,398,815	-				-0.1
4,398,837	+	hflX	b4173	0.11	-0.2
4,398,926	-	hflX	b4173	0.18	+1.4
4,398,961	+	hflX	b4173	0.21	+0.6
4,398,961	+	hflX	b4173	0.21	+2.2
4,398,965	+	hflX	b4173	0.21	-0.2
4,398,965	+	hflX	b4173	0.21	+0.1
4,398,968	-	hflX	b4173	0.21	-0.2
4,398,983	-	hflX	b4173	0.22	+2.7
4,398,983	-	hflX	b4173	0.22	+0.4
4,398,992	-	hflX	b4173	0.23	+0.8
4,399,118	+	hflX	b4173	0.33	+0.3
4,399,140	+	hflX	b4173	0.35	+0.8
4,399,154	+	hflX	b4173	0.36	+0.1
4,399,217	-	hflX	b4173	0.41	-1.4
4,399,307	+	hflX	b4173	0.48	+0.6
4,399,307	+	hflX	b4173	0.48	+0.3
4,399,365	-	hflX	b4173	0.52	+0.1
4,399,365	-	hflX	b4173	0.52	+0.7
4,399,407	+	hflX	b4173	0.56	+0.8
4,399,407	+	hflX	b4173	0.56	+0.1
4,399,421	-	hflX	b4173	0.57	+0.4
4,399,449	-	hflX	b4173	0.59	-0.9
4,399,457	-	hflX	b4173	0.59	+0.3
4,399,457	-	hflX	b4173	0.59	+1.0
4,399,457	-	hflX	b4173	0.59	-0.4
4,399,500	-	hflX	b4173	0.63	-0.6
4,399,500	-	hflX	b4173	0.63	-0.3
4,399,542	+	hflX	b4173	0.66	+0.8
4,399,622	+	hflX	b4173	0.72	+0.7
4,399,691	+	hflX	b4173	0.78	+0.5
4,399,761	+	hflX	b4173	0.83	+1.0
4,399,793	-	hflX	b4173	0.86	-0.2
4,399,804	+	hflX	b4173	0.87	+0.4
4,400,041	+				+0.3
4,400,041	+				+0.3
4,400,043	-				-0.2
4,400,126	+				-0.4
4,400,162	+				-1.0
4,400,162	+				-0.5
4,400,293	-	hflK	b4174	0.18	-1.2
4,400,298	+	hflK	b4174	0.19	-0.7
4,400,298	+	hflK	b4174	0.19	+0.1
4,400,356	+	hflK	b4174	0.23	-0.4
4,400,385	-	hflK	b4174	0.26	-1.4
4,400,385	-	hflK	b4174	0.26	+1.1
4,400,411	+	hflK	b4174	0.28	-0.4
4,400,416	+	hflK	b4174	0.28	-2.5
4,400,416	+	hflK	b4174	0.28	-0.7
4,400,429	-	hflK	b4174	0.29	-0.5
4,400,476	-	hflK	b4174	0.33	-1.2
4,400,502	-	hflK	b4174	0.35	-1.9
4,400,534	-	hflK	b4174	0.38	+0.2
4,400,546	-	hflK	b4174	0.38	-0.3
4,400,555	-	hflK	b4174	0.39	-0.6
4,400,582	+	hflK	b4174	0.41	-0.3
4,400,586	+	hflK	b4174	0.42	+0.4
4,400,586	+	hflK	b4174	0.42	-2.2
4,400,620	-	hflK	b4174	0.44	+0.2
4,400,643	+	hflK	b4174	0.46	-0.5
4,400,654	+	hflK	b4174	0.47	-0.3
4,400,704	-	hflK	b4174	0.51	+0.2
4,400,704	-	hflK	b4174	0.51	-2.1
4,400,709	-	hflK	b4174	0.51	+1.7
4,400,716	+	hflK	b4174	0.52	-1.7
4,400,716	+	hflK	b4174	0.52	-0.3
4,400,747	+	hflK	b4174	0.54	-0.0
4,400,749	+	hflK	b4174	0.55	-0.9
4,400,767	-	hflK	b4174	0.56	+0.2
4,400,779	-	hflK	b4174	0.57	-0.8
4,400,779	-	hflK	b4174	0.57	-0.4
4,400,860	+	hflK	b4174	0.63	-0.7
4,400,875	-	hflK	b4174	0.65	-0.8
4,400,908	-	hflK	b4174	0.67	+0.1
4,400,932	+	hflK	b4174	0.69	-1.6
4,400,933	+	hflK	b4174	0.69	+0.5
4,400,942	+	hflK	b4174	0.70	-0.7
4,400,942	+	hflK	b4174	0.70	-1.2
4,400,942	-	hflK	b4174	0.70	-0.1
4,400,951	-	hflK	b4174	0.71	-0.1
4,400,951	-	hflK	b4174	0.71	-0.4
4,400,952	+	hflK	b4174	0.71	+0.5
4,400,952	+	hflK	b4174	0.71	+0.3
4,400,952	+	hflK	b4174	0.71	-0.6
4,400,966	+	hflK	b4174	0.72	-0.5