Strain Fitness in Escherichia coli BW25113 around b2859

Experiment: M9 with Methotrexate 0.1 mM 48 hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygeK and ygeN are separated by 221 nucleotidesygeN and ygeO overlap by 59 nucleotidesygeO and insD-4 are separated by 11 nucleotidesinsD-4 and insC overlap by 43 nucleotides b2856: ygeK - hypothetical protein (RefSeq), at 2,992,482 to 2,993,114 ygeK b2858: ygeN - hypothetical protein (NCBI), at 2,993,336 to 2,994,042 ygeN b2859: ygeO - hypothetical protein (RefSeq), at 2,993,984 to 2,994,382 ygeO b2860: insD-4 - IS2 insertion element transposase InsAB' (NCBI), at 2,994,394 to 2,995,299 insD-4 b2861: insC - KpLE2 phage-like element; IS2 insertion element repressor InsA (RefSeq), at 2,995,257 to 2,995,622 insC Position (kb) 2993 2994 2995Strain fitness (log2 ratio) -1 0 1 2 3at 2994.162 kb on - strand, within ygeOat 2994.221 kb on - strand, within ygeOat 2994.286 kb on - strand, within ygeOat 2994.297 kb on - strand, within ygeOat 2994.318 kb on - strand, within ygeOat 2994.341 kb on - strand, within ygeOat 2994.407 kb on - strandat 2994.407 kb on - strandat 2994.419 kb on - strandat 2994.419 kb on - strandat 2994.420 kb on - strandat 2994.435 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Methotrexate 0.1 mM 48 hr
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2,994,162 - ygeO b2859 0.45 +1.2
2,994,221 - ygeO b2859 0.59 +1.2
2,994,286 - ygeO b2859 0.76 -0.8
2,994,297 - ygeO b2859 0.78 +2.8
2,994,318 - ygeO b2859 0.84 +1.4
2,994,341 - ygeO b2859 0.89 +0.0
2,994,407 - +0.2
2,994,407 - -0.8
2,994,419 - -0.1
2,994,419 - +0.3
2,994,420 - +0.3
2,994,435 - -0.6

Or see this region's nucleotide sequence