Strain Fitness in Escherichia coli BW25113 around b4006
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
4,202,993 | - | purD | b4005 | 0.25 | -2.3 |
4,203,007 | + | purD | b4005 | 0.27 | -4.5 |
4,203,030 | + | purD | b4005 | 0.28 | -5.0 |
4,203,128 | + | purD | b4005 | 0.36 | -4.1 |
4,203,128 | + | purD | b4005 | 0.36 | -3.6 |
4,203,130 | + | purD | b4005 | 0.36 | -2.0 |
4,203,143 | - | purD | b4005 | 0.37 | -5.5 |
4,203,159 | + | purD | b4005 | 0.38 | -3.8 |
4,203,235 | + | purD | b4005 | 0.44 | -2.8 |
4,203,243 | - | purD | b4005 | 0.45 | -2.9 |
4,203,360 | + | purD | b4005 | 0.54 | -3.2 |
4,203,385 | + | purD | b4005 | 0.56 | -4.0 |
4,203,428 | + | purD | b4005 | 0.59 | -4.0 |
4,203,445 | + | purD | b4005 | 0.60 | -3.2 |
4,203,445 | + | purD | b4005 | 0.60 | -3.4 |
4,203,491 | - | purD | b4005 | 0.64 | -2.9 |
4,203,491 | - | purD | b4005 | 0.64 | -4.1 |
4,203,496 | + | purD | b4005 | 0.64 | -5.6 |
4,203,505 | + | purD | b4005 | 0.65 | -2.6 |
4,203,550 | - | purD | b4005 | 0.69 | -3.1 |
4,203,657 | - | purD | b4005 | 0.77 | -2.5 |
4,203,657 | - | purD | b4005 | 0.77 | -3.4 |
4,203,673 | - | purD | b4005 | 0.78 | -3.0 |
4,203,673 | - | purD | b4005 | 0.78 | -2.7 |
4,203,719 | + | purD | b4005 | 0.82 | -3.2 |
4,203,838 | - | -3.4 | |||
4,203,853 | - | -3.6 | |||
4,203,853 | - | -4.5 | |||
4,204,001 | + | -3.2 | |||
4,204,001 | + | -2.6 | |||
4,204,105 | - | -2.8 | |||
4,204,154 | - | purH | b4006 | 0.12 | -2.0 |
4,204,200 | + | purH | b4006 | 0.15 | -3.6 |
4,204,212 | + | purH | b4006 | 0.15 | -3.7 |
4,204,231 | - | purH | b4006 | 0.17 | -3.2 |
4,204,257 | + | purH | b4006 | 0.18 | -3.8 |
4,204,297 | - | purH | b4006 | 0.21 | -3.1 |
4,204,297 | - | purH | b4006 | 0.21 | -2.0 |
4,204,358 | + | purH | b4006 | 0.25 | -4.1 |
4,204,386 | + | purH | b4006 | 0.26 | -3.5 |
4,204,386 | + | purH | b4006 | 0.26 | -3.0 |
4,204,394 | - | purH | b4006 | 0.27 | -2.0 |
4,204,394 | - | purH | b4006 | 0.27 | -2.3 |
4,204,394 | - | purH | b4006 | 0.27 | -2.5 |
4,204,394 | - | purH | b4006 | 0.27 | -3.1 |
4,204,407 | + | purH | b4006 | 0.28 | -3.5 |
4,204,413 | - | purH | b4006 | 0.28 | -3.9 |
4,204,433 | + | purH | b4006 | 0.29 | -3.8 |
4,204,527 | + | purH | b4006 | 0.35 | -3.6 |
4,204,527 | + | purH | b4006 | 0.35 | -2.3 |
4,204,528 | - | purH | b4006 | 0.35 | -3.0 |
4,204,528 | - | purH | b4006 | 0.35 | -1.6 |
4,204,567 | - | purH | b4006 | 0.38 | -3.7 |
4,204,567 | - | purH | b4006 | 0.38 | -3.3 |
4,204,737 | + | purH | b4006 | 0.48 | -2.5 |
4,204,759 | + | purH | b4006 | 0.50 | -3.0 |
4,204,766 | + | purH | b4006 | 0.50 | -3.2 |
4,204,793 | - | purH | b4006 | 0.52 | -4.3 |
4,204,837 | + | purH | b4006 | 0.55 | -3.5 |
4,204,837 | + | purH | b4006 | 0.55 | -3.7 |
4,204,837 | + | purH | b4006 | 0.55 | -6.5 |
4,204,840 | - | purH | b4006 | 0.55 | -6.0 |
4,204,840 | - | purH | b4006 | 0.55 | -3.6 |
4,204,845 | - | purH | b4006 | 0.55 | -3.7 |
4,204,851 | + | purH | b4006 | 0.56 | -1.6 |
4,204,889 | + | purH | b4006 | 0.58 | -3.3 |
4,204,921 | - | purH | b4006 | 0.60 | -2.6 |
4,204,965 | - | purH | b4006 | 0.63 | -3.6 |
4,205,089 | - | purH | b4006 | 0.71 | -3.9 |
4,205,156 | + | purH | b4006 | 0.75 | -2.3 |
4,205,156 | + | purH | b4006 | 0.75 | -3.4 |
4,205,159 | + | purH | b4006 | 0.75 | -1.3 |
4,205,159 | + | purH | b4006 | 0.75 | -2.0 |
4,205,167 | - | purH | b4006 | 0.76 | -3.1 |
4,205,167 | - | purH | b4006 | 0.76 | -2.3 |
4,205,245 | - | purH | b4006 | 0.80 | -2.0 |
4,205,245 | - | purH | b4006 | 0.80 | -3.2 |
4,205,298 | + | purH | b4006 | 0.84 | -2.3 |
4,205,313 | + | purH | b4006 | 0.85 | -3.1 |
4,205,356 | + | purH | b4006 | 0.87 | -2.3 |
4,205,356 | + | purH | b4006 | 0.87 | -2.5 |
4,205,446 | + | -2.6 | |||
4,205,447 | - | -3.2 | |||
4,205,447 | - | -3.2 | |||
4,205,451 | - | -3.3 | |||
4,205,458 | + | -2.8 | |||
4,205,458 | + | -1.7 | |||
4,205,464 | - | -4.1 | |||
4,205,581 | + | -1.2 | |||
4,205,707 | - | -0.3 | |||
4,205,726 | + | +0.0 | |||
4,205,726 | + | -0.6 | |||
4,205,776 | - | +0.3 | |||
4,205,787 | + | +0.0 | |||
4,205,984 | + | -0.1 |
Or see this region's nucleotide sequence