Strain Fitness in Escherichia coli BW25113 around b3204
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
3,344,190 | + | -0.2 | |||
3,344,190 | + | +0.2 | |||
3,344,193 | - | -1.6 | |||
3,344,193 | - | +0.0 | |||
3,344,195 | + | +0.2 | |||
3,344,201 | - | +0.2 | |||
3,344,302 | + | yhbH | b3203 | 0.37 | -0.4 |
3,344,302 | + | yhbH | b3203 | 0.37 | +0.1 |
3,344,310 | - | yhbH | b3203 | 0.40 | -1.8 |
3,344,345 | + | yhbH | b3203 | 0.52 | -0.5 |
3,344,346 | - | yhbH | b3203 | 0.52 | -2.1 |
3,344,354 | - | yhbH | b3203 | 0.55 | -1.8 |
3,344,354 | - | yhbH | b3203 | 0.55 | -1.8 |
3,344,476 | + | +0.1 | |||
3,344,502 | + | +0.3 | |||
3,344,514 | + | +0.4 | |||
3,344,522 | - | -1.2 | |||
3,344,524 | - | -1.8 | |||
3,344,524 | - | -1.1 | |||
3,344,545 | + | +0.2 | |||
3,344,554 | - | -1.6 | |||
3,344,626 | + | -0.7 | |||
3,344,636 | + | -2.2 | |||
3,344,636 | + | -0.5 | |||
3,344,784 | + | ptsN | b3204 | 0.37 | -3.2 |
3,344,801 | + | ptsN | b3204 | 0.41 | -2.3 |
3,344,810 | - | ptsN | b3204 | 0.43 | -2.0 |
3,344,813 | + | ptsN | b3204 | 0.43 | -3.8 |
3,344,813 | - | ptsN | b3204 | 0.43 | -1.4 |
3,344,883 | - | ptsN | b3204 | 0.58 | -1.0 |
3,344,914 | - | ptsN | b3204 | 0.64 | -0.7 |
3,344,929 | + | ptsN | b3204 | 0.67 | -2.3 |
3,344,933 | + | ptsN | b3204 | 0.68 | -0.6 |
3,344,967 | - | ptsN | b3204 | 0.75 | -1.0 |
3,344,967 | - | ptsN | b3204 | 0.75 | -0.2 |
3,345,026 | + | ptsN | b3204 | 0.87 | -3.8 |
3,345,026 | + | ptsN | b3204 | 0.87 | +0.2 |
3,345,026 | + | ptsN | b3204 | 0.87 | -0.3 |
3,345,034 | - | ptsN | b3204 | 0.88 | +0.6 |
3,345,034 | - | ptsN | b3204 | 0.88 | -1.6 |
3,345,034 | - | ptsN | b3204 | 0.88 | -1.8 |
3,345,034 | - | ptsN | b3204 | 0.88 | -2.7 |
3,345,066 | + | -1.3 | |||
3,345,072 | + | -0.3 | |||
3,345,072 | + | +0.2 | |||
3,345,102 | - | -2.1 | |||
3,345,102 | - | -1.2 | |||
3,345,102 | - | -0.9 | |||
3,345,116 | - | +1.0 | |||
3,345,116 | - | -0.4 | |||
3,345,139 | - | -1.6 | |||
3,345,140 | + | -0.0 | |||
3,345,231 | + | yhbJ | b3205 | 0.11 | -0.8 |
3,345,249 | - | yhbJ | b3205 | 0.13 | -2.4 |
3,345,264 | - | yhbJ | b3205 | 0.15 | -1.8 |
3,345,264 | - | yhbJ | b3205 | 0.15 | -1.8 |
3,345,305 | - | yhbJ | b3205 | 0.20 | -2.4 |
3,345,343 | + | yhbJ | b3205 | 0.24 | -2.5 |
3,345,396 | - | yhbJ | b3205 | 0.30 | -1.0 |
3,345,698 | + | yhbJ | b3205 | 0.66 | +0.0 |
3,345,698 | + | yhbJ | b3205 | 0.66 | -1.7 |
3,345,735 | + | yhbJ | b3205 | 0.70 | -1.0 |
3,345,863 | - | yhbJ | b3205 | 0.85 | -3.4 |
3,345,863 | - | yhbJ | b3205 | 0.85 | -1.4 |
3,345,892 | - | yhbJ | b3205 | 0.88 | -2.9 |
3,345,892 | - | yhbJ | b3205 | 0.88 | -1.2 |
3,345,909 | - | -1.7 | |||
3,345,953 | + | -0.6 | |||
3,346,034 | - | npr | b3206 | 0.17 | +0.4 |
Or see this region's nucleotide sequence