Strain Fitness in Escherichia coli BW25113 around b3095
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
3,244,860 | - | exuR | b3094 | 0.24 | -0.2 |
3,245,058 | - | exuR | b3094 | 0.49 | -0.4 |
3,245,058 | - | exuR | b3094 | 0.49 | +0.2 |
3,245,086 | - | exuR | b3094 | 0.53 | -0.1 |
3,245,086 | - | exuR | b3094 | 0.53 | +0.2 |
3,245,098 | - | exuR | b3094 | 0.55 | -0.1 |
3,245,168 | + | exuR | b3094 | 0.64 | -0.2 |
3,245,168 | + | exuR | b3094 | 0.64 | +0.4 |
3,245,183 | - | exuR | b3094 | 0.66 | -0.5 |
3,245,200 | + | exuR | b3094 | 0.68 | +0.3 |
3,245,217 | - | exuR | b3094 | 0.70 | -1.2 |
3,245,299 | + | exuR | b3094 | 0.80 | +0.8 |
3,245,299 | + | exuR | b3094 | 0.80 | +0.0 |
3,245,376 | - | +1.2 | |||
3,245,415 | + | +0.0 | |||
3,245,420 | + | +0.5 | |||
3,245,512 | + | -0.2 | |||
3,245,514 | + | -0.2 | |||
3,245,522 | - | -0.0 | |||
3,245,532 | - | -0.5 | |||
3,245,536 | + | -0.1 | |||
3,245,536 | + | -0.0 | |||
3,245,546 | + | +0.4 | |||
3,245,546 | + | +0.1 | |||
3,245,554 | - | -0.2 | |||
3,245,554 | - | -0.6 | |||
3,245,556 | - | +0.4 | |||
3,245,607 | + | +0.8 | |||
3,245,651 | + | +0.2 | |||
3,245,676 | + | +0.1 | |||
3,245,678 | + | +0.2 | |||
3,245,679 | - | -0.5 | |||
3,245,684 | - | -0.4 | |||
3,245,684 | - | -1.2 | |||
3,245,684 | - | -0.3 | |||
3,245,690 | - | -0.5 | |||
3,245,695 | + | -0.0 | |||
3,245,712 | - | -0.8 | |||
3,245,726 | + | +0.8 | |||
3,245,856 | + | -0.2 | |||
3,245,914 | - | yqjA | b3095 | 0.18 | -0.8 |
3,245,923 | - | yqjA | b3095 | 0.19 | -0.7 |
3,245,950 | - | yqjA | b3095 | 0.23 | -0.3 |
3,246,000 | - | yqjA | b3095 | 0.31 | -0.6 |
3,246,005 | - | yqjA | b3095 | 0.32 | -2.0 |
3,246,059 | - | yqjA | b3095 | 0.40 | -1.7 |
3,246,059 | - | yqjA | b3095 | 0.40 | -1.6 |
3,246,059 | - | yqjA | b3095 | 0.40 | -1.4 |
3,246,059 | - | yqjA | b3095 | 0.40 | -0.5 |
3,246,070 | + | yqjA | b3095 | 0.41 | -1.0 |
3,246,082 | - | yqjA | b3095 | 0.43 | -1.0 |
3,246,082 | - | yqjA | b3095 | 0.43 | -1.4 |
3,246,097 | - | yqjA | b3095 | 0.46 | -2.3 |
3,246,097 | - | yqjA | b3095 | 0.46 | -1.4 |
3,246,128 | - | yqjA | b3095 | 0.50 | -1.6 |
3,246,128 | - | yqjA | b3095 | 0.50 | -1.3 |
3,246,159 | + | yqjA | b3095 | 0.55 | -0.9 |
3,246,159 | + | yqjA | b3095 | 0.55 | -1.2 |
3,246,196 | + | yqjA | b3095 | 0.60 | -1.2 |
3,246,204 | - | yqjA | b3095 | 0.62 | -0.8 |
3,246,233 | + | yqjA | b3095 | 0.66 | -0.5 |
3,246,233 | + | yqjA | b3095 | 0.66 | -0.8 |
3,246,280 | + | yqjA | b3095 | 0.73 | -0.1 |
3,246,286 | + | yqjA | b3095 | 0.74 | -1.1 |
3,246,288 | - | yqjA | b3095 | 0.74 | -0.2 |
3,246,288 | - | yqjA | b3095 | 0.74 | -2.0 |
3,246,310 | - | yqjA | b3095 | 0.78 | -1.0 |
3,246,464 | + | -0.9 | |||
3,246,464 | + | -0.6 | |||
3,246,470 | + | +0.5 | |||
3,246,489 | + | -0.4 | |||
3,246,493 | + | +0.4 | |||
3,246,493 | + | +0.4 | |||
3,246,509 | + | yqjB | b3096 | 0.12 | -0.5 |
3,246,538 | - | yqjB | b3096 | 0.20 | -0.3 |
3,246,587 | + | yqjB | b3096 | 0.33 | -0.1 |
3,246,587 | + | yqjB | b3096 | 0.33 | -0.0 |
3,246,603 | - | yqjB | b3096 | 0.37 | -0.2 |
3,246,649 | - | yqjB | b3096 | 0.49 | -0.3 |
3,246,681 | + | yqjB | b3096 | 0.57 | -0.2 |
3,246,751 | + | yqjB | b3096 | 0.76 | +0.1 |
3,246,760 | + | yqjB | b3096 | 0.78 | +0.2 |
3,246,760 | + | yqjB | b3096 | 0.78 | -0.1 |
3,246,766 | - | yqjB | b3096 | 0.79 | -0.2 |
3,246,781 | + | yqjB | b3096 | 0.83 | -0.7 |
3,246,781 | + | yqjB | b3096 | 0.83 | -0.4 |
3,246,789 | - | yqjB | b3096 | 0.85 | -0.2 |
3,246,799 | + | yqjB | b3096 | 0.88 | -0.5 |
3,246,834 | + | +0.3 | |||
3,246,834 | + | +0.1 | |||
3,246,873 | - | -0.2 | |||
3,246,873 | - | -0.3 | |||
3,246,937 | + | +0.5 | |||
3,246,961 | - | +0.5 | |||
3,246,961 | - | -0.1 | |||
3,247,049 | + | yqjC | b3097 | 0.16 | -0.4 |
3,247,054 | + | yqjC | b3097 | 0.17 | +0.1 |
3,247,057 | - | yqjC | b3097 | 0.18 | -0.0 |
3,247,057 | - | yqjC | b3097 | 0.18 | +0.7 |
3,247,063 | + | yqjC | b3097 | 0.20 | -0.4 |
3,247,067 | - | yqjC | b3097 | 0.21 | +0.1 |
3,247,140 | + | yqjC | b3097 | 0.40 | -0.1 |
3,247,140 | + | yqjC | b3097 | 0.40 | +0.5 |
3,247,170 | + | yqjC | b3097 | 0.49 | +0.0 |
3,247,177 | - | yqjC | b3097 | 0.50 | -0.1 |
3,247,257 | - | yqjC | b3097 | 0.72 | -0.3 |
3,247,257 | - | yqjC | b3097 | 0.72 | -0.0 |
3,247,377 | - | -0.3 | |||
3,247,382 | + | -0.8 |
Or see this region's nucleotide sequence