Strain Fitness in Escherichia coli BW25113 around b2764
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
2,887,203 | - | cysI | b2763 | 0.46 | -2.6 |
2,887,203 | - | cysI | b2763 | 0.46 | -3.2 |
2,887,234 | - | cysI | b2763 | 0.48 | -2.6 |
2,887,339 | - | cysI | b2763 | 0.54 | -3.8 |
2,887,339 | - | cysI | b2763 | 0.54 | -3.0 |
2,887,531 | - | cysI | b2763 | 0.65 | -1.3 |
2,887,531 | - | cysI | b2763 | 0.65 | -2.3 |
2,887,565 | + | cysI | b2763 | 0.67 | -1.8 |
2,887,565 | + | cysI | b2763 | 0.67 | -2.3 |
2,887,606 | + | cysI | b2763 | 0.70 | -5.1 |
2,887,614 | - | cysI | b2763 | 0.70 | -2.8 |
2,887,654 | + | cysI | b2763 | 0.73 | -5.0 |
2,887,657 | - | cysI | b2763 | 0.73 | -2.6 |
2,887,657 | - | cysI | b2763 | 0.73 | -2.7 |
2,887,690 | - | cysI | b2763 | 0.75 | -3.6 |
2,887,943 | + | cysI | b2763 | 0.90 | -3.1 |
2,887,943 | + | cysI | b2763 | 0.90 | -3.6 |
2,887,978 | - | -4.4 | |||
2,887,979 | - | -4.3 | |||
2,887,986 | + | -3.2 | |||
2,888,091 | + | -5.1 | |||
2,888,140 | - | -2.0 | |||
2,888,145 | - | -3.0 | |||
2,888,159 | + | -4.0 | |||
2,888,159 | + | -3.7 | |||
2,888,301 | + | cysJ | b2764 | 0.10 | -3.1 |
2,888,306 | + | cysJ | b2764 | 0.10 | -6.6 |
2,888,377 | - | cysJ | b2764 | 0.14 | -2.3 |
2,888,377 | - | cysJ | b2764 | 0.14 | -0.6 |
2,888,382 | - | cysJ | b2764 | 0.14 | -3.0 |
2,888,382 | - | cysJ | b2764 | 0.14 | -2.4 |
2,888,417 | + | cysJ | b2764 | 0.16 | -4.7 |
2,888,513 | - | cysJ | b2764 | 0.22 | -1.6 |
2,888,513 | - | cysJ | b2764 | 0.22 | -3.6 |
2,888,515 | + | cysJ | b2764 | 0.22 | -3.2 |
2,888,515 | + | cysJ | b2764 | 0.22 | -4.3 |
2,888,525 | + | cysJ | b2764 | 0.22 | -3.6 |
2,888,525 | + | cysJ | b2764 | 0.22 | -3.2 |
2,888,551 | - | cysJ | b2764 | 0.24 | -4.1 |
2,888,551 | - | cysJ | b2764 | 0.24 | -1.9 |
2,888,648 | - | cysJ | b2764 | 0.29 | -3.3 |
2,888,648 | - | cysJ | b2764 | 0.29 | -2.8 |
2,888,662 | + | cysJ | b2764 | 0.30 | -3.7 |
2,888,662 | + | cysJ | b2764 | 0.30 | -0.6 |
2,888,857 | + | cysJ | b2764 | 0.41 | -5.4 |
2,888,892 | - | cysJ | b2764 | 0.43 | -2.1 |
2,888,928 | + | cysJ | b2764 | 0.45 | -4.0 |
2,888,993 | - | cysJ | b2764 | 0.48 | -2.0 |
2,888,993 | - | cysJ | b2764 | 0.48 | -4.5 |
2,889,056 | + | cysJ | b2764 | 0.52 | -5.4 |
2,889,056 | + | cysJ | b2764 | 0.52 | -4.2 |
2,889,107 | + | cysJ | b2764 | 0.55 | -1.8 |
2,889,114 | + | cysJ | b2764 | 0.55 | -2.2 |
2,889,114 | + | cysJ | b2764 | 0.55 | -3.3 |
2,889,375 | + | cysJ | b2764 | 0.70 | -5.1 |
2,889,375 | + | cysJ | b2764 | 0.70 | -3.6 |
2,889,391 | - | cysJ | b2764 | 0.71 | -4.7 |
2,889,391 | - | cysJ | b2764 | 0.71 | -3.7 |
2,889,481 | - | cysJ | b2764 | 0.76 | -3.5 |
2,889,492 | - | cysJ | b2764 | 0.76 | -4.6 |
2,889,495 | - | cysJ | b2764 | 0.76 | -2.6 |
2,889,495 | - | cysJ | b2764 | 0.76 | -2.4 |
2,889,583 | - | cysJ | b2764 | 0.81 | -4.8 |
2,889,583 | - | cysJ | b2764 | 0.81 | -3.5 |
2,889,804 | - | -0.5 | |||
2,889,804 | - | -3.5 | |||
2,889,919 | - | -1.9 | |||
2,889,919 | - | -3.4 | |||
2,889,988 | + | -2.2 | |||
2,889,988 | + | -3.9 | |||
2,890,285 | + | ygcM | b2765 | 0.13 | -0.5 |
2,890,305 | - | ygcM | b2765 | 0.19 | -0.1 |
2,890,305 | - | ygcM | b2765 | 0.19 | -0.3 |
2,890,344 | - | ygcM | b2765 | 0.30 | +0.1 |
2,890,344 | - | ygcM | b2765 | 0.30 | -1.0 |
2,890,541 | + | ygcM | b2765 | 0.83 | -0.6 |
2,890,541 | + | ygcM | b2765 | 0.83 | -1.8 |
2,890,544 | - | ygcM | b2765 | 0.84 | -1.0 |
2,890,544 | - | ygcM | b2765 | 0.84 | +0.6 |
2,890,551 | + | ygcM | b2765 | 0.86 | -0.3 |
2,890,607 | - | +0.2 | |||
2,890,649 | - | +0.4 | |||
2,890,820 | + | ygcN | b2766 | 0.11 | +0.1 |
2,890,822 | + | ygcN | b2766 | 0.11 | +0.2 |
2,890,825 | + | ygcN | b2766 | 0.11 | -0.1 |
2,890,830 | - | ygcN | b2766 | 0.12 | +0.2 |
2,890,830 | - | ygcN | b2766 | 0.12 | +0.4 |
2,890,830 | - | ygcN | b2766 | 0.12 | -0.6 |
2,890,830 | - | ygcN | b2766 | 0.12 | +1.4 |
2,890,883 | - | ygcN | b2766 | 0.16 | +0.3 |
2,890,883 | - | ygcN | b2766 | 0.16 | -0.1 |
2,890,885 | - | ygcN | b2766 | 0.16 | -0.0 |
2,890,902 | + | ygcN | b2766 | 0.18 | -0.2 |
Or see this region's nucleotide sequence