Strain Fitness in Escherichia coli BW25113 around b2320
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
2,433,753 | - | -0.2 | |||
2,433,846 | + | usg | b2319 | 0.19 | -1.4 |
2,433,853 | - | usg | b2319 | 0.19 | -0.1 |
2,433,853 | - | usg | b2319 | 0.19 | -0.9 |
2,433,910 | + | usg | b2319 | 0.25 | -0.9 |
2,433,943 | + | usg | b2319 | 0.28 | +0.1 |
2,433,952 | - | usg | b2319 | 0.29 | +0.1 |
2,433,952 | - | usg | b2319 | 0.29 | +0.7 |
2,434,057 | + | usg | b2319 | 0.39 | -0.2 |
2,434,167 | - | usg | b2319 | 0.50 | +0.7 |
2,434,287 | - | usg | b2319 | 0.62 | +0.9 |
2,434,287 | - | usg | b2319 | 0.62 | +0.9 |
2,434,339 | + | usg | b2319 | 0.67 | -0.1 |
2,434,360 | + | usg | b2319 | 0.69 | -0.3 |
2,434,626 | - | +0.5 | |||
2,434,647 | + | -2.4 | |||
2,434,647 | + | -0.6 | |||
2,434,690 | - | -0.6 | |||
2,434,711 | + | +0.4 | |||
2,434,761 | + | -3.6 | |||
2,434,787 | + | -2.8 | |||
2,434,881 | - | pdxB | b2320 | 0.13 | -4.9 |
2,434,881 | - | pdxB | b2320 | 0.13 | -4.1 |
2,434,932 | + | pdxB | b2320 | 0.17 | -4.0 |
2,434,932 | + | pdxB | b2320 | 0.17 | -3.4 |
2,434,999 | - | pdxB | b2320 | 0.23 | -4.7 |
2,435,038 | - | pdxB | b2320 | 0.26 | -5.1 |
2,435,105 | - | -3.1 | |||
2,435,110 | + | pdxB | b2320 | 0.33 | -5.4 |
2,435,110 | + | pdxB | b2320 | 0.33 | -5.5 |
2,435,230 | + | pdxB | b2320 | 0.43 | -4.7 |
2,435,230 | + | pdxB | b2320 | 0.43 | -3.9 |
2,435,246 | + | pdxB | b2320 | 0.45 | -2.8 |
2,435,285 | + | pdxB | b2320 | 0.48 | -5.7 |
2,435,324 | + | pdxB | b2320 | 0.52 | -3.6 |
2,435,324 | + | pdxB | b2320 | 0.52 | -4.2 |
2,435,343 | - | pdxB | b2320 | 0.53 | -4.3 |
2,435,511 | + | pdxB | b2320 | 0.68 | -3.1 |
2,435,796 | - | -3.7 | |||
2,435,796 | - | -4.3 | |||
2,435,801 | - | -3.8 | |||
2,435,838 | + | -4.3 | |||
2,435,838 | + | -5.6 | |||
2,435,913 | - | -0.1 | |||
2,435,939 | - | +0.1 | |||
2,435,982 | - | -0.2 | |||
2,436,015 | - | +0.4 | |||
2,436,067 | + | -0.0 | |||
2,436,124 | - | flk | b2321 | 0.15 | -0.0 |
2,436,134 | - | flk | b2321 | 0.16 | +0.3 |
2,436,134 | - | flk | b2321 | 0.16 | +0.1 |
2,436,134 | - | flk | b2321 | 0.16 | +0.2 |
2,436,164 | - | flk | b2321 | 0.19 | +0.4 |
2,436,211 | + | flk | b2321 | 0.24 | -0.2 |
2,436,258 | - | flk | b2321 | 0.29 | +0.1 |
2,436,258 | - | flk | b2321 | 0.29 | +0.1 |
2,436,260 | + | flk | b2321 | 0.29 | -0.7 |
2,436,352 | - | flk | b2321 | 0.38 | -0.4 |
2,436,352 | - | flk | b2321 | 0.38 | -2.5 |
2,436,359 | + | flk | b2321 | 0.39 | +0.2 |
2,436,359 | + | flk | b2321 | 0.39 | -0.3 |
2,436,629 | - | flk | b2321 | 0.66 | +0.4 |
2,436,774 | + | flk | b2321 | 0.81 | +0.2 |
2,436,813 | - | flk | b2321 | 0.84 | -0.4 |
2,436,813 | - | flk | b2321 | 0.84 | +0.0 |
2,436,828 | + | flk | b2321 | 0.86 | +0.1 |
Or see this region's nucleotide sequence