Strain Fitness in Escherichia coli BW25113 around b2188
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
2,281,447 | + | yejK | b2186 | 0.48 | -0.1 |
2,281,456 | - | yejK | b2186 | 0.49 | -0.1 |
2,281,483 | + | yejK | b2186 | 0.52 | -0.2 |
2,281,512 | - | yejK | b2186 | 0.55 | +0.3 |
2,281,512 | - | yejK | b2186 | 0.55 | -0.1 |
2,281,780 | - | yejK | b2186 | 0.81 | -0.1 |
2,281,887 | + | +0.3 | |||
2,281,905 | - | +0.3 | |||
2,282,004 | - | -0.0 | |||
2,282,026 | + | -1.0 | |||
2,282,026 | + | -0.1 | |||
2,282,256 | + | yejL | b2187 | 0.46 | -0.4 |
2,282,304 | + | yejL | b2187 | 0.67 | -0.6 |
2,283,015 | + | yejM | b2188 | 0.35 | +0.9 |
2,283,060 | + | yejM | b2188 | 0.38 | -1.1 |
2,283,103 | - | yejM | b2188 | 0.40 | -0.1 |
2,283,140 | - | yejM | b2188 | 0.42 | -0.1 |
2,283,162 | + | yejM | b2188 | 0.43 | -1.2 |
2,283,194 | - | yejM | b2188 | 0.45 | +0.9 |
2,283,202 | + | yejM | b2188 | 0.46 | -1.0 |
2,283,202 | + | yejM | b2188 | 0.46 | -0.8 |
2,283,223 | + | yejM | b2188 | 0.47 | -0.6 |
2,283,223 | + | yejM | b2188 | 0.47 | -1.4 |
2,283,226 | + | yejM | b2188 | 0.47 | -1.5 |
2,283,279 | + | yejM | b2188 | 0.50 | -1.1 |
2,283,304 | - | yejM | b2188 | 0.51 | -2.1 |
2,283,324 | + | yejM | b2188 | 0.53 | -2.4 |
2,283,324 | + | yejM | b2188 | 0.53 | -1.5 |
2,283,395 | + | yejM | b2188 | 0.57 | +0.9 |
2,283,395 | + | yejM | b2188 | 0.57 | -2.1 |
2,283,409 | - | yejM | b2188 | 0.57 | -1.8 |
2,283,474 | - | yejM | b2188 | 0.61 | -2.1 |
2,283,688 | + | yejM | b2188 | 0.73 | -1.3 |
2,283,688 | + | yejM | b2188 | 0.73 | -2.5 |
2,283,712 | - | yejM | b2188 | 0.75 | -3.4 |
2,283,752 | + | yejM | b2188 | 0.77 | -1.1 |
2,283,752 | + | yejM | b2188 | 0.77 | -1.2 |
2,283,752 | + | yejM | b2188 | 0.77 | -1.1 |
2,283,758 | - | yejM | b2188 | 0.77 | -0.4 |
2,283,760 | - | yejM | b2188 | 0.77 | -1.4 |
2,283,789 | + | yejM | b2188 | 0.79 | -1.4 |
2,283,797 | + | yejM | b2188 | 0.79 | -1.7 |
2,283,875 | + | yejM | b2188 | 0.84 | -2.1 |
2,283,875 | + | yejM | b2188 | 0.84 | -2.8 |
2,283,900 | - | yejM | b2188 | 0.85 | -2.6 |
2,283,910 | - | yejM | b2188 | 0.86 | +0.3 |
2,283,917 | - | yejM | b2188 | 0.86 | -3.7 |
2,283,980 | - | yejM | b2188 | 0.90 | -1.8 |
2,284,005 | + | -1.0 | |||
2,284,005 | + | -0.8 | |||
2,284,005 | + | -0.5 | |||
2,284,051 | - | -3.6 | |||
2,284,051 | - | -1.3 | |||
2,284,056 | - | -2.7 | |||
2,284,205 | + | -0.4 | |||
2,284,255 | - | proL | b2189 | 0.29 | -0.8 |
2,284,384 | - | -0.1 | |||
2,284,395 | - | -0.4 | |||
2,284,454 | + | -0.4 | |||
2,284,454 | + | +0.7 | |||
2,284,462 | - | -0.1 | |||
2,284,479 | - | +0.0 | |||
2,284,506 | + | -0.4 | |||
2,284,528 | - | +0.2 | |||
2,284,528 | - | -0.1 | |||
2,284,606 | - | -0.9 | |||
2,284,606 | - | -0.1 | |||
2,284,667 | + | yejO | b2190 | 0.10 | +0.1 |
2,284,704 | + | yejO | b2190 | 0.12 | -0.9 |
2,284,729 | - | yejO | b2190 | 0.13 | +0.3 |
2,284,729 | - | yejO | b2190 | 0.13 | +0.1 |
2,284,748 | - | yejO | b2190 | 0.13 | -0.5 |
2,284,755 | - | yejO | b2190 | 0.14 | -0.1 |
2,284,764 | - | yejO | b2190 | 0.14 | -0.5 |
2,284,764 | - | yejO | b2190 | 0.14 | +0.7 |
2,284,795 | - | yejO | b2190 | 0.15 | -0.1 |
2,284,795 | - | yejO | b2190 | 0.15 | -0.2 |
2,284,796 | - | yejO | b2190 | 0.15 | -0.3 |
2,284,796 | - | yejO | b2190 | 0.15 | -0.2 |
2,284,932 | + | yejO | b2190 | 0.21 | -0.3 |
2,284,982 | - | yejO | b2190 | 0.23 | -0.3 |
2,284,982 | - | yejO | b2190 | 0.23 | +0.1 |
2,284,993 | + | yejO | b2190 | 0.23 | -0.2 |
2,285,000 | + | yejO | b2190 | 0.23 | -0.3 |
2,285,001 | - | yejO | b2190 | 0.23 | -0.1 |
2,285,126 | + | yejO | b2190 | 0.28 | +0.4 |
Or see this region's nucleotide sequence