Strain Fitness in Escherichia coli BW25113 around b1290
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
1,349,183 | - | +0.5 | |||
1,349,235 | + | +0.2 | |||
1,349,243 | - | -0.1 | |||
1,349,254 | + | +0.2 | |||
1,349,254 | + | -0.5 | |||
1,349,313 | + | +0.2 | |||
1,349,335 | + | -0.2 | |||
1,349,574 | - | ycjD | b1289 | 0.40 | +0.0 |
1,349,577 | + | ycjD | b1289 | 0.41 | +0.1 |
1,349,597 | - | ycjD | b1289 | 0.47 | -0.6 |
1,349,645 | + | ycjD | b1289 | 0.60 | +0.0 |
1,349,963 | - | sapF | b1290 | 0.14 | -2.0 |
1,350,108 | + | sapF | b1290 | 0.32 | -1.2 |
1,350,244 | + | -0.7 | |||
1,350,244 | + | sapF | b1290 | 0.49 | -0.2 |
1,350,286 | + | sapF | b1290 | 0.54 | +1.8 |
1,350,294 | - | sapF | b1290 | 0.55 | -2.6 |
1,350,550 | + | sapF | b1290 | 0.86 | +0.8 |
1,350,656 | - | -0.4 | |||
1,350,749 | + | +0.5 | |||
1,350,855 | + | sapD | b1291 | 0.20 | +0.3 |
1,350,861 | + | sapD | b1291 | 0.20 | -1.0 |
1,350,997 | - | sapD | b1291 | 0.34 | -2.6 |
1,351,021 | - | sapD | b1291 | 0.36 | -1.0 |
1,351,342 | - | sapD | b1291 | 0.69 | -0.7 |
Or see this region's nucleotide sequence