Strain Fitness in Escherichia coli BW25113 around b1185
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
1,230,893 | + | umuC | b1184 | 0.38 | +0.1 |
1,230,956 | + | umuC | b1184 | 0.43 | -0.7 |
1,231,013 | - | umuC | b1184 | 0.48 | -0.2 |
1,231,029 | + | umuC | b1184 | 0.49 | -0.2 |
1,231,038 | - | umuC | b1184 | 0.50 | +0.3 |
1,231,109 | + | umuC | b1184 | 0.55 | -1.4 |
1,231,109 | + | umuC | b1184 | 0.55 | +0.2 |
1,231,208 | + | -0.6 | |||
1,231,208 | + | umuC | b1184 | 0.63 | -0.1 |
1,231,270 | + | umuC | b1184 | 0.68 | +0.4 |
1,231,270 | + | umuC | b1184 | 0.68 | +0.4 |
1,231,320 | + | umuC | b1184 | 0.72 | +0.3 |
1,231,359 | + | umuC | b1184 | 0.75 | +0.6 |
1,231,359 | + | umuC | b1184 | 0.75 | -0.7 |
1,231,382 | - | umuC | b1184 | 0.77 | +0.9 |
1,231,457 | + | umuC | b1184 | 0.83 | -0.3 |
1,231,519 | - | umuC | b1184 | 0.87 | -0.3 |
1,231,550 | + | umuC | b1184 | 0.90 | +0.9 |
1,231,551 | - | -0.7 | |||
1,231,553 | - | +0.1 | |||
1,231,573 | - | -0.2 | |||
1,231,597 | + | -0.2 | |||
1,231,625 | + | -0.0 | |||
1,231,627 | - | +0.1 | |||
1,231,643 | - | -0.3 | |||
1,231,645 | - | +0.3 | |||
1,231,660 | - | -0.3 | |||
1,231,961 | + | dsbB | b1185 | 0.45 | -3.3 |
1,231,961 | + | dsbB | b1185 | 0.45 | -1.7 |
1,231,979 | - | dsbB | b1185 | 0.48 | -3.1 |
1,232,074 | + | dsbB | b1185 | 0.66 | -1.4 |
1,232,074 | + | dsbB | b1185 | 0.66 | -1.4 |
1,232,077 | - | dsbB | b1185 | 0.67 | +0.9 |
1,232,272 | + | -0.1 | |||
1,232,272 | + | -0.1 | |||
1,232,504 | - | -0.4 | |||
1,232,509 | - | +0.0 | |||
1,232,525 | + | -0.0 | |||
1,232,569 | - | nhaB | b1186 | 0.11 | +1.1 |
1,232,784 | - | nhaB | b1186 | 0.25 | -0.2 |
1,232,784 | - | nhaB | b1186 | 0.25 | -0.6 |
1,232,921 | - | nhaB | b1186 | 0.34 | +0.1 |
1,232,921 | - | nhaB | b1186 | 0.34 | -0.2 |
1,232,936 | + | nhaB | b1186 | 0.35 | +0.1 |
1,233,026 | + | nhaB | b1186 | 0.41 | +0.5 |
1,233,087 | - | nhaB | b1186 | 0.45 | +0.0 |
1,233,196 | - | nhaB | b1186 | 0.52 | +0.2 |
Or see this region's nucleotide sequence