Strain Fitness in Escherichia coli BW25113 around b0592
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
621,819 | + | ybdA | b0591 | 0.24 | +0.2 |
621,846 | + | ybdA | b0591 | 0.26 | +0.6 |
621,846 | + | ybdA | b0591 | 0.26 | -0.2 |
621,966 | + | ybdA | b0591 | 0.35 | -0.2 |
622,236 | + | ybdA | b0591 | 0.57 | -0.1 |
622,246 | + | ybdA | b0591 | 0.58 | +0.2 |
622,255 | - | ybdA | b0591 | 0.59 | +0.2 |
622,255 | - | ybdA | b0591 | 0.59 | -0.5 |
622,365 | + | ybdA | b0591 | 0.67 | -0.2 |
622,365 | + | ybdA | b0591 | 0.67 | +0.1 |
622,409 | - | ybdA | b0591 | 0.71 | -0.5 |
622,434 | + | ybdA | b0591 | 0.73 | +0.3 |
622,441 | - | ybdA | b0591 | 0.73 | -0.1 |
622,441 | - | ybdA | b0591 | 0.73 | -0.8 |
622,472 | + | ybdA | b0591 | 0.76 | -0.2 |
622,472 | + | ybdA | b0591 | 0.76 | -0.3 |
622,491 | + | ybdA | b0591 | 0.77 | -0.1 |
622,596 | + | ybdA | b0591 | 0.86 | -0.3 |
622,596 | + | ybdA | b0591 | 0.86 | -0.4 |
622,611 | - | ybdA | b0591 | 0.87 | -0.7 |
622,611 | - | ybdA | b0591 | 0.87 | +0.5 |
622,615 | + | ybdA | b0591 | 0.87 | -0.1 |
622,615 | + | ybdA | b0591 | 0.87 | +0.1 |
622,801 | - | -0.2 | |||
622,819 | + | -1.0 | |||
622,819 | + | -0.7 | |||
622,847 | - | -1.2 | |||
622,875 | + | fepB | b0592 | 0.10 | -0.5 |
622,875 | + | fepB | b0592 | 0.10 | -1.3 |
622,899 | + | fepB | b0592 | 0.13 | -1.0 |
622,917 | + | fepB | b0592 | 0.15 | -3.2 |
622,923 | + | fepB | b0592 | 0.15 | -1.3 |
622,958 | + | fepB | b0592 | 0.19 | -1.8 |
623,019 | + | fepB | b0592 | 0.25 | -1.5 |
623,019 | + | fepB | b0592 | 0.25 | -1.3 |
623,028 | - | fepB | b0592 | 0.26 | -1.3 |
623,028 | - | fepB | b0592 | 0.26 | -1.6 |
623,032 | + | fepB | b0592 | 0.27 | -1.6 |
623,119 | + | fepB | b0592 | 0.36 | -1.6 |
623,140 | - | fepB | b0592 | 0.38 | -1.3 |
623,148 | - | fepB | b0592 | 0.39 | -1.1 |
623,148 | - | fepB | b0592 | 0.39 | -0.5 |
623,199 | - | fepB | b0592 | 0.44 | -1.6 |
623,253 | - | fepB | b0592 | 0.50 | -2.1 |
623,341 | - | fepB | b0592 | 0.59 | -1.3 |
623,405 | - | fepB | b0592 | 0.66 | -0.7 |
623,405 | - | fepB | b0592 | 0.66 | -1.7 |
623,426 | + | fepB | b0592 | 0.68 | -2.4 |
623,426 | + | fepB | b0592 | 0.68 | -1.2 |
623,458 | - | fepB | b0592 | 0.71 | -2.9 |
623,458 | - | fepB | b0592 | 0.71 | -0.5 |
623,467 | - | fepB | b0592 | 0.72 | -1.9 |
623,467 | - | fepB | b0592 | 0.72 | -0.3 |
623,470 | - | fepB | b0592 | 0.72 | -1.3 |
623,470 | - | fepB | b0592 | 0.72 | -0.8 |
623,563 | + | fepB | b0592 | 0.82 | -1.3 |
623,576 | - | fepB | b0592 | 0.83 | -1.1 |
623,576 | - | fepB | b0592 | 0.83 | -3.0 |
623,591 | - | fepB | b0592 | 0.85 | -1.3 |
623,591 | - | fepB | b0592 | 0.85 | -1.8 |
623,610 | + | fepB | b0592 | 0.87 | -1.3 |
623,672 | + | -1.6 | |||
623,708 | + | -0.2 | |||
623,806 | + | -0.4 | |||
623,822 | + | -0.0 | |||
623,822 | + | -0.3 | |||
623,830 | - | -0.1 | |||
623,832 | - | +0.3 | |||
623,841 | + | -0.4 | |||
623,857 | + | +0.4 | |||
623,865 | + | -0.2 | |||
623,869 | + | -0.2 | |||
623,869 | + | +0.2 | |||
623,879 | - | +0.1 | |||
623,907 | - | +0.4 | |||
623,907 | - | +0.7 | |||
624,008 | + | -0.1 | |||
624,130 | - | -0.3 | |||
624,130 | - | -0.1 | |||
624,138 | - | -0.2 | |||
624,138 | - | -0.3 | |||
624,259 | + | entC | b0593 | 0.13 | -0.2 |
624,428 | - | entC | b0593 | 0.27 | -0.3 |
624,428 | - | entC | b0593 | 0.27 | -0.8 |
624,490 | + | entC | b0593 | 0.32 | -0.1 |
624,547 | - | entC | b0593 | 0.37 | +1.5 |
624,580 | - | entC | b0593 | 0.40 | +0.1 |
624,691 | + | entC | b0593 | 0.50 | +0.2 |
624,691 | + | entC | b0593 | 0.50 | +0.1 |
624,699 | - | entC | b0593 | 0.50 | +0.4 |
624,699 | - | entC | b0593 | 0.50 | -0.1 |
624,699 | - | entC | b0593 | 0.50 | +0.1 |
Or see this region's nucleotide sequence