Strain Fitness in Escherichia coli BW25113 around b0200
Experiment: M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr |
---|---|---|---|---|---|
remove | |||||
221,846 | + | metN | b0199 | 0.22 | +0.5 |
221,847 | + | metN | b0199 | 0.23 | +0.0 |
221,848 | + | metN | b0199 | 0.23 | -0.1 |
221,856 | + | metN | b0199 | 0.23 | -0.2 |
221,911 | - | metN | b0199 | 0.29 | +0.2 |
221,967 | + | metN | b0199 | 0.34 | -0.0 |
221,967 | + | metN | b0199 | 0.34 | +0.1 |
221,975 | - | metN | b0199 | 0.35 | +0.7 |
221,999 | - | metN | b0199 | 0.37 | +0.3 |
222,001 | + | metN | b0199 | 0.38 | -1.8 |
222,009 | - | metN | b0199 | 0.38 | +0.1 |
222,027 | - | metN | b0199 | 0.40 | +0.4 |
222,061 | - | metN | b0199 | 0.43 | +0.2 |
222,102 | - | metN | b0199 | 0.47 | -0.7 |
222,102 | - | metN | b0199 | 0.47 | -0.5 |
222,159 | + | metN | b0199 | 0.53 | -0.4 |
222,203 | + | metN | b0199 | 0.57 | -0.2 |
222,239 | + | metN | b0199 | 0.61 | +0.6 |
222,239 | + | metN | b0199 | 0.61 | -0.6 |
222,247 | + | metN | b0199 | 0.61 | -0.4 |
222,269 | - | metN | b0199 | 0.63 | -0.1 |
222,279 | - | metN | b0199 | 0.64 | +0.2 |
222,364 | - | metN | b0199 | 0.73 | -0.2 |
222,425 | - | metN | b0199 | 0.79 | -0.2 |
222,495 | - | metN | b0199 | 0.85 | +0.3 |
222,501 | + | metN | b0199 | 0.86 | -0.5 |
222,501 | + | metN | b0199 | 0.86 | -0.0 |
222,507 | - | metN | b0199 | 0.87 | +0.6 |
222,511 | + | metN | b0199 | 0.87 | -0.5 |
222,520 | - | metN | b0199 | 0.88 | +0.1 |
222,578 | - | -0.3 | |||
222,588 | - | -0.2 | |||
222,588 | - | -1.7 | |||
222,594 | - | +1.3 | |||
222,594 | - | -0.5 | |||
222,620 | - | +0.6 | |||
222,731 | - | +0.1 | |||
222,732 | + | -0.1 | |||
222,732 | + | +0.4 | |||
222,813 | + | +0.2 | |||
222,907 | - | gmhB | b0200 | 0.13 | +0.0 |
222,907 | - | gmhB | b0200 | 0.13 | +0.0 |
222,941 | - | gmhB | b0200 | 0.19 | -1.3 |
223,224 | + | gmhB | b0200 | 0.68 | +0.0 |
223,232 | - | gmhB | b0200 | 0.69 | +1.0 |
223,232 | - | gmhB | b0200 | 0.69 | +1.0 |
223,477 | - | -0.2 |
Or see this region's nucleotide sequence