Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0751 and PP_5456 are separated by 601 nucleotides PP_5456 and PP_0753 are separated by 145 nucleotides PP_0753 and PP_0754 are separated by 74 nucleotides
PP_0751: PP_0751 - malate:quinone oxidoreductase, at 868,079 to 869,587
_0751
PP_5456: PP_5456 - conserved protein of unknown function, at 870,189 to 870,422
_5456
PP_0753: PP_0753 - putative Lipoprotein, at 870,568 to 871,152
_0753
PP_0754: PP_0754 - conserved protein of unknown function, at 871,227 to 871,538
_0754
Position (kb) 870
871 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 869.608 kb on - strand at 869.608 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.618 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.630 kb on - strand at 869.758 kb on - strand at 869.805 kb on - strand at 870.117 kb on - strand at 870.117 kb on - strand at 870.119 kb on - strand at 870.134 kb on - strand at 870.134 kb on - strand at 870.136 kb on - strand at 870.136 kb on - strand at 870.136 kb on - strand at 870.136 kb on - strand at 870.176 kb on - strand at 870.374 kb on - strand, within PP_5456 at 870.374 kb on - strand, within PP_5456 at 870.461 kb on - strand at 870.524 kb on + strand at 870.524 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.530 kb on + strand at 870.530 kb on + strand at 870.530 kb on + strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.763 kb on + strand, within PP_0753 at 870.764 kb on - strand, within PP_0753 at 870.764 kb on - strand, within PP_0753 at 870.764 kb on - strand, within PP_0753 at 870.916 kb on + strand, within PP_0753 at 870.916 kb on + strand at 870.917 kb on - strand, within PP_0753 at 870.917 kb on - strand, within PP_0753 at 870.917 kb on - strand, within PP_0753 at 870.940 kb on + strand, within PP_0753 at 870.940 kb on + strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.955 kb on - strand, within PP_0753 at 871.003 kb on + strand, within PP_0753 at 871.150 kb on + strand at 871.151 kb on - strand at 871.151 kb on - strand at 871.151 kb on - strand at 871.228 kb on + strand at 871.228 kb on + strand at 871.228 kb on + strand at 871.239 kb on + strand at 871.239 kb on + strand at 871.239 kb on + strand at 871.239 kb on + strand at 871.240 kb on - strand at 871.240 kb on - strand at 871.240 kb on - strand at 871.321 kb on + strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.402 kb on + strand, within PP_0754 at 871.402 kb on + strand, within PP_0754 at 871.403 kb on - strand, within PP_0754
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 869,608 - +0.0 869,608 - -0.5 869,618 - +0.7 869,618 - +1.6 869,618 - +1.2 869,618 - +0.0 869,618 - +1.0 869,618 - +0.3 869,630 - -0.8 869,630 - -0.3 869,630 - +0.7 869,630 - +2.4 869,630 - +0.5 869,630 - +0.8 869,630 - +1.3 869,758 - +1.5 869,805 - -0.5 870,117 - -0.9 870,117 - -0.0 870,119 - +1.0 870,134 - -0.4 870,134 - -1.3 870,136 - -1.6 870,136 - -0.1 870,136 - -0.9 870,136 - -0.1 870,176 - -1.4 870,374 - PP_5456 0.79 -0.9 870,374 - PP_5456 0.79 -3.1 870,461 - -0.5 870,524 + -0.6 870,524 + +1.4 870,528 + +2.2 870,528 + -2.0 870,528 + -0.9 870,528 + +0.6 870,528 + -0.1 870,528 + -2.2 870,528 + +0.4 870,528 + -2.4 870,529 - +0.5 870,529 - -1.5 870,529 - -1.2 870,529 - -0.9 870,529 - -1.0 870,529 - -0.0 870,529 - -0.5 870,529 - +1.9 870,530 + -2.4 870,530 + -1.9 870,530 + +1.0 870,531 - +2.4 870,531 - -1.5 870,531 - -3.0 870,531 - -1.3 870,531 - -1.0 870,531 - +0.8 870,531 - -1.5 870,531 - +1.3 870,531 - -0.4 870,531 - -1.3 870,531 - +0.8 870,531 - -0.2 870,531 - +2.8 870,531 - +1.8 870,763 + PP_0753 0.33 +0.4 870,764 - PP_0753 0.34 +0.6 870,764 - PP_0753 0.34 -1.2 870,764 - PP_0753 0.34 -0.8 870,916 + PP_0753 0.59 -0.6 870,916 + +0.8 870,917 - PP_0753 0.60 -0.4 870,917 - PP_0753 0.60 -2.2 870,917 - PP_0753 0.60 +0.2 870,940 + PP_0753 0.64 -0.0 870,940 + PP_0753 0.64 -0.9 870,941 - PP_0753 0.64 +0.1 870,941 - PP_0753 0.64 -0.8 870,941 - PP_0753 0.64 +0.2 870,941 - PP_0753 0.64 -1.3 870,955 - PP_0753 0.66 -1.2 871,003 + PP_0753 0.74 -1.6 871,150 + -1.5 871,151 - -2.3 871,151 - +1.6 871,151 - +3.6 871,228 + -0.5 871,228 + -0.7 871,228 + -0.8 871,239 + +1.1 871,239 + -2.5 871,239 + +1.5 871,239 + -2.3 871,240 - +0.8 871,240 - +2.8 871,240 - +0.9 871,321 + PP_0754 0.30 +1.6 871,322 - PP_0754 0.30 -0.0 871,322 - PP_0754 0.30 +0.9 871,322 - PP_0754 0.30 +0.8 871,322 - PP_0754 0.30 -0.7 871,402 + PP_0754 0.56 -0.8 871,402 + PP_0754 0.56 +0.9 871,403 - PP_0754 0.56 +0.4
Or see this region's nucleotide sequence