Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5081 and PP_5082 overlap by 4 nucleotides PP_5082 and PP_5083 overlap by 4 nucleotides
PP_5080: PP_5080 - type 4 pili biogenesis protein, at 5,801,595 to 5,802,833
_5080
PP_5081: PP_5081 - Type IV pili biogenesis protein, at 5,802,781 to 5,803,797
_5081
PP_5082: PP_5082 - Type IV pili biogenesis protein PilN, at 5,803,794 to 5,804,330
_5082
PP_5083: PP_5083 - putative Type IV pili biogenesis protein PilM, at 5,804,327 to 5,805,208
_5083
Position (kb) 5803
5804
5805 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 5802.838 kb on + strand at 5802.839 kb on - strand at 5802.839 kb on - strand at 5802.839 kb on - strand at 5802.970 kb on + strand, within PP_5081 at 5802.970 kb on + strand, within PP_5081 at 5802.970 kb on + strand, within PP_5081 at 5802.970 kb on + strand, within PP_5081 at 5802.970 kb on + strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.971 kb on - strand, within PP_5081 at 5802.972 kb on + strand, within PP_5081 at 5802.972 kb on + strand, within PP_5081 at 5802.972 kb on + strand, within PP_5081 at 5802.972 kb on + strand, within PP_5081 at 5802.972 kb on + strand, within PP_5081 at 5802.973 kb on - strand, within PP_5081 at 5802.973 kb on - strand, within PP_5081 at 5802.973 kb on - strand, within PP_5081 at 5802.973 kb on - strand, within PP_5081 at 5802.973 kb on - strand, within PP_5081 at 5803.230 kb on + strand, within PP_5081 at 5803.231 kb on - strand, within PP_5081 at 5803.399 kb on + strand, within PP_5081 at 5803.435 kb on + strand, within PP_5081 at 5803.435 kb on + strand, within PP_5081 at 5803.436 kb on - strand, within PP_5081 at 5803.436 kb on - strand, within PP_5081 at 5803.526 kb on + strand, within PP_5081 at 5803.526 kb on + strand, within PP_5081 at 5803.567 kb on + strand, within PP_5081 at 5803.568 kb on - strand, within PP_5081 at 5803.568 kb on - strand, within PP_5081 at 5803.666 kb on + strand, within PP_5081 at 5803.666 kb on + strand, within PP_5081 at 5803.667 kb on - strand, within PP_5081 at 5803.968 kb on - strand, within PP_5082 at 5804.040 kb on + strand, within PP_5082 at 5804.040 kb on + strand, within PP_5082 at 5804.088 kb on + strand, within PP_5082 at 5804.089 kb on - strand, within PP_5082 at 5804.142 kb on + strand, within PP_5082 at 5804.142 kb on + strand, within PP_5082 at 5804.142 kb on + strand, within PP_5082 at 5804.142 kb on + strand, within PP_5082 at 5804.143 kb on - strand, within PP_5082 at 5804.143 kb on - strand, within PP_5082 at 5804.143 kb on - strand, within PP_5082 at 5804.143 kb on - strand, within PP_5082 at 5804.144 kb on + strand, within PP_5082 at 5804.144 kb on + strand, within PP_5082 at 5804.144 kb on + strand, within PP_5082 at 5804.144 kb on + strand, within PP_5082 at 5804.145 kb on - strand, within PP_5082 at 5804.145 kb on - strand, within PP_5082 at 5804.145 kb on - strand, within PP_5082 at 5804.145 kb on - strand, within PP_5082 at 5804.412 kb on + strand at 5804.413 kb on - strand at 5804.450 kb on + strand, within PP_5083 at 5804.519 kb on + strand, within PP_5083 at 5804.790 kb on - strand, within PP_5083 at 5804.950 kb on + strand, within PP_5083 at 5805.158 kb on - strand at 5805.230 kb on + strand at 5805.230 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,802,838 + -2.1 5,802,839 - -2.3 5,802,839 - -0.7 5,802,839 - +0.5 5,802,970 + PP_5081 0.19 +0.3 5,802,970 + PP_5081 0.19 +0.9 5,802,970 + PP_5081 0.19 -0.1 5,802,970 + PP_5081 0.19 +1.2 5,802,970 + PP_5081 0.19 +0.8 5,802,971 - PP_5081 0.19 +0.1 5,802,971 - PP_5081 0.19 -0.7 5,802,971 - PP_5081 0.19 -0.2 5,802,971 - PP_5081 0.19 +0.5 5,802,971 - PP_5081 0.19 +1.6 5,802,971 - PP_5081 0.19 -0.3 5,802,971 - PP_5081 0.19 +0.0 5,802,971 - PP_5081 0.19 +0.5 5,802,971 - PP_5081 0.19 +1.0 5,802,971 - PP_5081 0.19 -0.7 5,802,971 - PP_5081 0.19 -1.2 5,802,972 + PP_5081 0.19 -0.2 5,802,972 + PP_5081 0.19 +0.5 5,802,972 + PP_5081 0.19 -0.0 5,802,972 + PP_5081 0.19 -1.0 5,802,972 + PP_5081 0.19 +1.0 5,802,973 - PP_5081 0.19 -0.2 5,802,973 - PP_5081 0.19 -0.7 5,802,973 - PP_5081 0.19 -0.0 5,802,973 - PP_5081 0.19 +0.4 5,802,973 - PP_5081 0.19 +0.4 5,803,230 + PP_5081 0.44 +0.6 5,803,231 - PP_5081 0.44 -0.3 5,803,399 + PP_5081 0.61 -0.8 5,803,435 + PP_5081 0.64 -1.0 5,803,435 + PP_5081 0.64 +0.1 5,803,436 - PP_5081 0.64 -0.7 5,803,436 - PP_5081 0.64 -2.5 5,803,526 + PP_5081 0.73 +1.1 5,803,526 + PP_5081 0.73 -0.7 5,803,567 + PP_5081 0.77 -1.1 5,803,568 - PP_5081 0.77 -0.8 5,803,568 - PP_5081 0.77 -1.6 5,803,666 + PP_5081 0.87 +0.1 5,803,666 + PP_5081 0.87 +0.3 5,803,667 - PP_5081 0.87 -0.2 5,803,968 - PP_5082 0.32 -0.5 5,804,040 + PP_5082 0.46 -0.7 5,804,040 + PP_5082 0.46 +0.6 5,804,088 + PP_5082 0.55 +0.1 5,804,089 - PP_5082 0.55 +0.5 5,804,142 + PP_5082 0.65 -0.2 5,804,142 + PP_5082 0.65 -0.6 5,804,142 + PP_5082 0.65 -0.5 5,804,142 + PP_5082 0.65 +0.2 5,804,143 - PP_5082 0.65 +1.0 5,804,143 - PP_5082 0.65 +0.1 5,804,143 - PP_5082 0.65 -1.7 5,804,143 - PP_5082 0.65 +0.8 5,804,144 + PP_5082 0.65 -0.5 5,804,144 + PP_5082 0.65 +1.2 5,804,144 + PP_5082 0.65 -0.9 5,804,144 + PP_5082 0.65 -0.4 5,804,145 - PP_5082 0.65 +8.0 5,804,145 - PP_5082 0.65 +0.3 5,804,145 - PP_5082 0.65 -0.1 5,804,145 - PP_5082 0.65 -0.1 5,804,412 + +0.7 5,804,413 - +0.0 5,804,450 + PP_5083 0.14 -0.3 5,804,519 + PP_5083 0.22 +1.8 5,804,790 - PP_5083 0.52 +0.4 5,804,950 + PP_5083 0.71 +2.6 5,805,158 - -0.5 5,805,230 + +0.2 5,805,230 + +0.3
Or see this region's nucleotide sequence