Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5058 and PP_5059 are separated by 8 nucleotides PP_5059 and PP_5060 are separated by 43 nucleotides PP_5060 and PP_5061 are separated by 87 nucleotides
PP_5058: PP_5058 - Carboxy-terminal-processing protease, at 5,764,020 to 5,765,336
_5058
PP_5059: PP_5059 - conserved exported protein of unknown function, at 5,765,345 to 5,766,112
_5059
PP_5060: PP_5060 - conserved protein of unknown function, at 5,766,156 to 5,770,871
_5060
PP_5061: PP_5061 - Choline transporter, at 5,770,959 to 5,772,962
_5061
Position (kb) 5766
5767
5768
5769
5770
5771 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5765.344 kb on + strand at 5765.344 kb on + strand at 5765.344 kb on + strand at 5765.345 kb on - strand at 5765.345 kb on - strand at 5765.345 kb on - strand at 5765.351 kb on + strand at 5765.352 kb on - strand at 5765.352 kb on - strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.417 kb on + strand at 5765.418 kb on - strand at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.606 kb on + strand, within PP_5059 at 5765.847 kb on + strand, within PP_5059 at 5765.847 kb on + strand, within PP_5059 at 5765.848 kb on - strand, within PP_5059 at 5765.859 kb on + strand, within PP_5059 at 5765.860 kb on - strand, within PP_5059 at 5765.860 kb on - strand, within PP_5059 at 5765.915 kb on - strand, within PP_5059 at 5765.915 kb on - strand, within PP_5059 at 5766.085 kb on + strand at 5766.085 kb on + strand at 5766.193 kb on + strand at 5766.212 kb on - strand at 5766.222 kb on + strand at 5766.222 kb on + strand at 5766.223 kb on - strand at 5766.223 kb on - strand at 5766.403 kb on + strand at 5766.416 kb on - strand at 5766.416 kb on - strand at 5766.448 kb on + strand at 5766.449 kb on - strand at 5766.449 kb on - strand at 5766.520 kb on + strand at 5766.678 kb on - strand, within PP_5060 at 5766.678 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.823 kb on - strand, within PP_5060 at 5766.939 kb on + strand, within PP_5060 at 5766.940 kb on - strand, within PP_5060 at 5766.940 kb on - strand, within PP_5060 at 5766.986 kb on - strand, within PP_5060 at 5766.986 kb on - strand, within PP_5060 at 5767.060 kb on - strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.090 kb on + strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.091 kb on - strand, within PP_5060 at 5767.169 kb on - strand, within PP_5060 at 5767.169 kb on - strand, within PP_5060 at 5767.297 kb on + strand, within PP_5060 at 5767.297 kb on + strand, within PP_5060 at 5767.297 kb on + strand, within PP_5060 at 5767.297 kb on + strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.298 kb on - strand, within PP_5060 at 5767.389 kb on - strand, within PP_5060 at 5767.389 kb on - strand, within PP_5060 at 5767.425 kb on - strand, within PP_5060 at 5767.433 kb on - strand, within PP_5060 at 5767.433 kb on - strand, within PP_5060 at 5767.433 kb on - strand, within PP_5060 at 5767.549 kb on + strand, within PP_5060 at 5767.549 kb on + strand, within PP_5060 at 5767.549 kb on + strand, within PP_5060 at 5767.549 kb on + strand, within PP_5060 at 5767.550 kb on - strand, within PP_5060 at 5767.606 kb on + strand, within PP_5060 at 5767.606 kb on + strand, within PP_5060 at 5767.607 kb on - strand, within PP_5060 at 5767.750 kb on + strand, within PP_5060 at 5767.750 kb on + strand, within PP_5060 at 5767.751 kb on - strand, within PP_5060 at 5767.751 kb on - strand, within PP_5060 at 5767.754 kb on + strand, within PP_5060 at 5767.754 kb on + strand, within PP_5060 at 5767.754 kb on + strand, within PP_5060 at 5767.755 kb on - strand, within PP_5060 at 5767.755 kb on - strand, within PP_5060 at 5767.777 kb on + strand, within PP_5060 at 5767.826 kb on + strand, within PP_5060 at 5767.827 kb on - strand, within PP_5060 at 5768.022 kb on - strand, within PP_5060 at 5768.022 kb on - strand, within PP_5060 at 5768.254 kb on + strand, within PP_5060 at 5768.254 kb on + strand, within PP_5060 at 5768.254 kb on + strand, within PP_5060 at 5768.255 kb on - strand, within PP_5060 at 5768.255 kb on - strand, within PP_5060 at 5768.260 kb on + strand, within PP_5060 at 5768.274 kb on + strand, within PP_5060 at 5768.580 kb on + strand, within PP_5060 at 5768.580 kb on + strand, within PP_5060 at 5768.693 kb on - strand, within PP_5060 at 5768.725 kb on - strand, within PP_5060 at 5768.923 kb on + strand, within PP_5060 at 5768.924 kb on - strand, within PP_5060 at 5768.924 kb on - strand, within PP_5060 at 5768.924 kb on - strand, within PP_5060 at 5768.977 kb on + strand, within PP_5060 at 5769.074 kb on - strand, within PP_5060 at 5769.081 kb on + strand, within PP_5060 at 5769.098 kb on - strand, within PP_5060 at 5769.109 kb on + strand, within PP_5060 at 5769.110 kb on - strand, within PP_5060 at 5769.339 kb on + strand, within PP_5060 at 5769.356 kb on + strand, within PP_5060 at 5769.356 kb on + strand, within PP_5060 at 5769.356 kb on + strand, within PP_5060 at 5769.357 kb on - strand, within PP_5060 at 5769.357 kb on - strand, within PP_5060 at 5769.410 kb on - strand, within PP_5060 at 5769.451 kb on + strand, within PP_5060 at 5769.452 kb on - strand, within PP_5060 at 5769.452 kb on - strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.709 kb on + strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.710 kb on - strand, within PP_5060 at 5769.769 kb on - strand, within PP_5060 at 5769.796 kb on + strand, within PP_5060 at 5769.796 kb on + strand, within PP_5060 at 5769.797 kb on - strand, within PP_5060 at 5769.797 kb on - strand, within PP_5060 at 5769.797 kb on - strand, within PP_5060 at 5769.919 kb on + strand, within PP_5060 at 5769.919 kb on + strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand, within PP_5060 at 5769.920 kb on - strand at 5769.920 kb on - strand, within PP_5060 at 5770.006 kb on + strand, within PP_5060 at 5770.083 kb on + strand, within PP_5060 at 5770.084 kb on - strand, within PP_5060 at 5770.084 kb on - strand, within PP_5060 at 5770.233 kb on + strand, within PP_5060 at 5770.233 kb on + strand, within PP_5060 at 5770.233 kb on + strand, within PP_5060 at 5770.234 kb on - strand, within PP_5060 at 5770.234 kb on - strand, within PP_5060 at 5770.234 kb on - strand, within PP_5060 at 5770.234 kb on - strand, within PP_5060 at 5770.409 kb on - strand at 5770.675 kb on + strand at 5770.676 kb on - strand at 5770.726 kb on + strand at 5770.761 kb on + strand at 5770.903 kb on + strand at 5770.903 kb on + strand at 5770.903 kb on + strand at 5770.903 kb on + strand at 5770.903 kb on + strand at 5770.904 kb on - strand at 5770.904 kb on - strand at 5770.904 kb on - strand at 5770.904 kb on - strand at 5770.904 kb on - strand at 5770.907 kb on + strand at 5770.907 kb on + strand at 5770.907 kb on + strand at 5770.907 kb on + strand at 5770.907 kb on + strand at 5770.908 kb on - strand at 5770.908 kb on - strand at 5770.964 kb on + strand at 5770.964 kb on + strand at 5770.964 kb on + strand at 5770.965 kb on - strand at 5770.966 kb on + strand at 5770.966 kb on + strand at 5770.967 kb on - strand at 5771.053 kb on + strand at 5771.054 kb on - strand at 5771.054 kb on - strand at 5771.077 kb on + strand at 5771.077 kb on + strand at 5771.078 kb on - strand at 5771.151 kb on - strand at 5771.151 kb on - strand at 5771.152 kb on + strand at 5771.152 kb on + strand at 5771.152 kb on + strand at 5771.152 kb on + strand at 5771.152 kb on + strand at 5771.153 kb on - strand at 5771.153 kb on - strand at 5771.153 kb on - strand at 5771.174 kb on - strand, within PP_5061 at 5771.446 kb on + strand, within PP_5061 at 5771.447 kb on - strand, within PP_5061 at 5771.447 kb on - strand, within PP_5061
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,765,344 + +0.2 5,765,344 + -1.4 5,765,344 + -1.4 5,765,345 - +1.1 5,765,345 - -0.3 5,765,345 - -0.8 5,765,351 + +0.2 5,765,352 - -1.1 5,765,352 - -0.7 5,765,417 + +1.2 5,765,417 + +1.6 5,765,417 + -1.0 5,765,417 + -0.8 5,765,418 - -1.7 5,765,606 + PP_5059 0.34 +0.9 5,765,606 + PP_5059 0.34 +0.6 5,765,606 + PP_5059 0.34 +0.8 5,765,606 + PP_5059 0.34 -0.9 5,765,847 + PP_5059 0.65 -0.7 5,765,847 + PP_5059 0.65 -2.3 5,765,848 - PP_5059 0.65 +0.6 5,765,859 + PP_5059 0.67 -0.3 5,765,860 - PP_5059 0.67 -1.4 5,765,860 - PP_5059 0.67 +0.9 5,765,915 - PP_5059 0.74 -0.9 5,765,915 - PP_5059 0.74 +1.2 5,766,085 + -1.1 5,766,085 + +0.5 5,766,193 + -0.7 5,766,212 - -0.5 5,766,222 + -0.4 5,766,222 + -0.1 5,766,223 - +0.5 5,766,223 - +1.6 5,766,403 + +0.0 5,766,416 - -0.7 5,766,416 - +1.7 5,766,448 + -0.5 5,766,449 - -0.5 5,766,449 - -0.0 5,766,520 + +1.4 5,766,678 - PP_5060 0.11 -2.4 5,766,678 - PP_5060 0.11 -0.4 5,766,823 - PP_5060 0.14 -2.4 5,766,823 - PP_5060 0.14 +0.1 5,766,823 - PP_5060 0.14 +0.2 5,766,939 + PP_5060 0.17 -0.3 5,766,940 - PP_5060 0.17 -0.4 5,766,940 - PP_5060 0.17 -1.5 5,766,986 - PP_5060 0.18 -2.4 5,766,986 - PP_5060 0.18 -0.3 5,767,060 - PP_5060 0.19 -1.0 5,767,090 + PP_5060 0.20 -0.3 5,767,090 + PP_5060 0.20 +2.1 5,767,090 + PP_5060 0.20 +0.8 5,767,091 - PP_5060 0.20 +0.9 5,767,091 - PP_5060 0.20 +1.2 5,767,091 - PP_5060 0.20 -0.4 5,767,169 - PP_5060 0.21 +0.3 5,767,169 - PP_5060 0.21 -0.2 5,767,297 + PP_5060 0.24 +0.3 5,767,297 + PP_5060 0.24 -1.4 5,767,297 + PP_5060 0.24 -0.1 5,767,297 + PP_5060 0.24 -0.7 5,767,298 - PP_5060 0.24 -0.0 5,767,298 - PP_5060 0.24 -0.3 5,767,298 - PP_5060 0.24 -2.2 5,767,298 - PP_5060 0.24 +1.1 5,767,298 - PP_5060 0.24 -1.1 5,767,389 - PP_5060 0.26 +1.1 5,767,389 - PP_5060 0.26 -0.4 5,767,425 - PP_5060 0.27 +1.8 5,767,433 - PP_5060 0.27 +1.3 5,767,433 - PP_5060 0.27 -0.5 5,767,433 - PP_5060 0.27 +0.3 5,767,549 + PP_5060 0.30 -0.4 5,767,549 + PP_5060 0.30 -0.3 5,767,549 + PP_5060 0.30 +1.3 5,767,549 + PP_5060 0.30 -0.4 5,767,550 - PP_5060 0.30 +2.5 5,767,606 + PP_5060 0.31 -0.8 5,767,606 + PP_5060 0.31 +1.6 5,767,607 - PP_5060 0.31 -1.5 5,767,750 + PP_5060 0.34 -0.9 5,767,750 + PP_5060 0.34 -0.6 5,767,751 - PP_5060 0.34 -0.5 5,767,751 - PP_5060 0.34 +0.7 5,767,754 + PP_5060 0.34 -1.9 5,767,754 + PP_5060 0.34 +1.0 5,767,754 + PP_5060 0.34 +2.0 5,767,755 - PP_5060 0.34 +0.7 5,767,755 - PP_5060 0.34 -0.4 5,767,777 + PP_5060 0.34 +0.1 5,767,826 + PP_5060 0.35 +0.0 5,767,827 - PP_5060 0.35 -1.2 5,768,022 - PP_5060 0.40 +1.0 5,768,022 - PP_5060 0.40 -0.7 5,768,254 + PP_5060 0.44 -0.7 5,768,254 + PP_5060 0.44 -0.1 5,768,254 + PP_5060 0.44 -1.6 5,768,255 - PP_5060 0.45 +1.2 5,768,255 - PP_5060 0.45 +0.9 5,768,260 + PP_5060 0.45 +0.8 5,768,274 + PP_5060 0.45 -0.9 5,768,580 + PP_5060 0.51 +0.1 5,768,580 + PP_5060 0.51 +1.7 5,768,693 - PP_5060 0.54 -0.2 5,768,725 - PP_5060 0.54 +0.4 5,768,923 + PP_5060 0.59 +0.5 5,768,924 - PP_5060 0.59 +0.1 5,768,924 - PP_5060 0.59 +0.5 5,768,924 - PP_5060 0.59 +0.9 5,768,977 + PP_5060 0.60 +1.6 5,769,074 - PP_5060 0.62 +2.9 5,769,081 + PP_5060 0.62 -0.3 5,769,098 - PP_5060 0.62 +1.4 5,769,109 + PP_5060 0.63 -1.9 5,769,110 - PP_5060 0.63 +0.6 5,769,339 + PP_5060 0.67 -0.2 5,769,356 + PP_5060 0.68 +1.3 5,769,356 + PP_5060 0.68 -0.9 5,769,356 + PP_5060 0.68 +0.0 5,769,357 - PP_5060 0.68 +0.6 5,769,357 - PP_5060 0.68 -0.2 5,769,410 - PP_5060 0.69 +0.4 5,769,451 + PP_5060 0.70 +0.1 5,769,452 - PP_5060 0.70 +2.5 5,769,452 - PP_5060 0.70 -0.6 5,769,709 + PP_5060 0.75 -0.9 5,769,709 + PP_5060 0.75 -1.9 5,769,709 + PP_5060 0.75 -0.5 5,769,709 + PP_5060 0.75 -2.2 5,769,709 + PP_5060 0.75 +0.1 5,769,710 - PP_5060 0.75 -0.3 5,769,710 - PP_5060 0.75 -0.1 5,769,710 - PP_5060 0.75 +0.0 5,769,710 - PP_5060 0.75 +0.2 5,769,710 - PP_5060 0.75 -0.3 5,769,710 - PP_5060 0.75 +0.4 5,769,769 - PP_5060 0.77 -1.9 5,769,796 + PP_5060 0.77 -1.6 5,769,796 + PP_5060 0.77 +2.3 5,769,797 - PP_5060 0.77 -0.9 5,769,797 - PP_5060 0.77 +2.5 5,769,797 - PP_5060 0.77 +2.9 5,769,919 + PP_5060 0.80 +0.4 5,769,919 + PP_5060 0.80 +1.1 5,769,920 - PP_5060 0.80 +0.2 5,769,920 - PP_5060 0.80 +1.0 5,769,920 - PP_5060 0.80 -0.4 5,769,920 - PP_5060 0.80 +0.4 5,769,920 - PP_5060 0.80 +1.4 5,769,920 - +1.5 5,769,920 - PP_5060 0.80 +3.3 5,770,006 + PP_5060 0.82 -0.7 5,770,083 + PP_5060 0.83 -0.4 5,770,084 - PP_5060 0.83 +0.4 5,770,084 - PP_5060 0.83 +0.8 5,770,233 + PP_5060 0.86 +2.7 5,770,233 + PP_5060 0.86 +0.9 5,770,233 + PP_5060 0.86 +2.3 5,770,234 - PP_5060 0.86 +1.0 5,770,234 - PP_5060 0.86 +1.0 5,770,234 - PP_5060 0.86 +0.1 5,770,234 - PP_5060 0.86 -0.6 5,770,409 - +3.5 5,770,675 + +1.6 5,770,676 - -2.7 5,770,726 + -1.6 5,770,761 + +0.1 5,770,903 + +0.3 5,770,903 + +0.9 5,770,903 + -0.9 5,770,903 + +1.4 5,770,903 + +1.7 5,770,904 - +0.4 5,770,904 - -0.9 5,770,904 - +0.3 5,770,904 - +0.5 5,770,904 - +0.2 5,770,907 + +2.5 5,770,907 + -0.3 5,770,907 + -0.1 5,770,907 + +0.5 5,770,907 + -0.6 5,770,908 - +1.1 5,770,908 - +0.1 5,770,964 + -0.2 5,770,964 + +0.9 5,770,964 + -0.2 5,770,965 - -2.0 5,770,966 + -1.8 5,770,966 + +0.9 5,770,967 - -1.2 5,771,053 + +0.1 5,771,054 - -1.1 5,771,054 - -0.5 5,771,077 + +1.3 5,771,077 + -0.1 5,771,078 - -1.6 5,771,151 - -0.3 5,771,151 - +0.4 5,771,152 + +1.0 5,771,152 + -0.6 5,771,152 + -0.7 5,771,152 + -0.9 5,771,152 + -1.1 5,771,153 - +0.8 5,771,153 - +0.3 5,771,153 - -0.1 5,771,174 - PP_5061 0.11 -1.7 5,771,446 + PP_5061 0.24 +0.6 5,771,447 - PP_5061 0.24 +0.0 5,771,447 - PP_5061 0.24 -2.4
Or see this region's nucleotide sequence