Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5026 and PP_5027 are separated by 323 nucleotides PP_5027 and PP_5028 overlap by 4 nucleotides
PP_5026: PP_5026 - Glucans biosynthesis protein G, at 5,726,958 to 5,728,637
_5026
PP_5027: PP_5027 - D-tyrosyl-tRNA(Tyr) deacylase, at 5,728,961 to 5,729,398
_5027
PP_5028: PP_5028 - proline iminopeptidase, at 5,729,395 to 5,730,477
_5028
Position (kb) 5728
5729
5730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5728.001 kb on - strand, within PP_5026 at 5728.001 kb on - strand, within PP_5026 at 5728.036 kb on + strand, within PP_5026 at 5728.037 kb on - strand, within PP_5026 at 5728.037 kb on - strand, within PP_5026 at 5728.037 kb on - strand, within PP_5026 at 5728.156 kb on + strand, within PP_5026 at 5728.243 kb on + strand, within PP_5026 at 5728.264 kb on + strand, within PP_5026 at 5728.330 kb on + strand, within PP_5026 at 5728.330 kb on + strand, within PP_5026 at 5728.330 kb on + strand, within PP_5026 at 5728.405 kb on + strand, within PP_5026 at 5728.405 kb on + strand, within PP_5026 at 5728.406 kb on - strand, within PP_5026 at 5728.406 kb on - strand, within PP_5026 at 5728.650 kb on + strand at 5728.688 kb on + strand at 5728.787 kb on - strand at 5728.839 kb on + strand at 5728.839 kb on + strand at 5728.840 kb on - strand at 5728.840 kb on - strand at 5728.909 kb on + strand at 5728.909 kb on + strand at 5728.909 kb on + strand at 5728.910 kb on - strand at 5728.910 kb on - strand at 5728.910 kb on - strand at 5728.910 kb on - strand at 5728.910 kb on - strand at 5728.913 kb on + strand at 5728.918 kb on + strand at 5728.964 kb on + strand at 5728.965 kb on - strand at 5728.965 kb on - strand at 5728.975 kb on + strand at 5728.975 kb on + strand at 5729.039 kb on + strand, within PP_5027 at 5729.077 kb on - strand, within PP_5027 at 5729.177 kb on + strand, within PP_5027 at 5729.576 kb on + strand, within PP_5028 at 5729.669 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.883 kb on - strand, within PP_5028 at 5729.894 kb on + strand, within PP_5028 at 5729.894 kb on + strand, within PP_5028 at 5729.927 kb on + strand, within PP_5028 at 5730.064 kb on + strand, within PP_5028 at 5730.064 kb on + strand, within PP_5028 at 5730.185 kb on + strand, within PP_5028 at 5730.203 kb on + strand, within PP_5028 at 5730.203 kb on + strand, within PP_5028 at 5730.293 kb on + strand, within PP_5028 at 5730.293 kb on + strand, within PP_5028 at 5730.294 kb on - strand, within PP_5028 at 5730.294 kb on - strand, within PP_5028 at 5730.387 kb on + strand at 5730.387 kb on + strand at 5730.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,728,001 - PP_5026 0.62 -1.9 5,728,001 - PP_5026 0.62 +0.0 5,728,036 + PP_5026 0.64 -1.9 5,728,037 - PP_5026 0.64 -1.8 5,728,037 - PP_5026 0.64 -1.0 5,728,037 - PP_5026 0.64 -0.1 5,728,156 + PP_5026 0.71 +0.7 5,728,243 + PP_5026 0.76 -0.2 5,728,264 + PP_5026 0.78 +0.2 5,728,330 + PP_5026 0.82 -1.3 5,728,330 + PP_5026 0.82 +0.0 5,728,330 + PP_5026 0.82 -0.8 5,728,405 + PP_5026 0.86 -3.3 5,728,405 + PP_5026 0.86 -0.0 5,728,406 - PP_5026 0.86 -1.1 5,728,406 - PP_5026 0.86 -2.2 5,728,650 + -0.5 5,728,688 + -1.3 5,728,787 - +0.9 5,728,839 + +0.9 5,728,839 + -1.9 5,728,840 - -1.0 5,728,840 - -0.7 5,728,909 + -0.8 5,728,909 + -0.3 5,728,909 + -1.3 5,728,910 - -1.4 5,728,910 - +0.9 5,728,910 - -0.5 5,728,910 - +2.5 5,728,910 - +1.7 5,728,913 + +0.5 5,728,918 + -0.5 5,728,964 + -0.3 5,728,965 - +0.8 5,728,965 - +3.1 5,728,975 + -1.4 5,728,975 + -2.1 5,729,039 + PP_5027 0.18 -1.1 5,729,077 - PP_5027 0.26 -0.5 5,729,177 + PP_5027 0.49 -0.7 5,729,576 + PP_5028 0.17 +1.5 5,729,669 + PP_5028 0.25 +0.5 5,729,882 + PP_5028 0.45 -0.5 5,729,882 + PP_5028 0.45 +0.2 5,729,882 + PP_5028 0.45 +0.9 5,729,882 + PP_5028 0.45 -0.3 5,729,882 + PP_5028 0.45 -0.5 5,729,883 - PP_5028 0.45 +1.5 5,729,894 + PP_5028 0.46 +0.5 5,729,894 + PP_5028 0.46 -0.1 5,729,927 + PP_5028 0.49 -0.3 5,730,064 + PP_5028 0.62 +0.7 5,730,064 + PP_5028 0.62 -0.1 5,730,185 + PP_5028 0.73 +0.2 5,730,203 + PP_5028 0.75 -0.3 5,730,203 + PP_5028 0.75 +0.3 5,730,293 + PP_5028 0.83 -2.0 5,730,293 + PP_5028 0.83 +1.1 5,730,294 - PP_5028 0.83 +0.9 5,730,294 - PP_5028 0.83 -0.3 5,730,387 + -0.8 5,730,387 + -0.5 5,730,387 + +1.8
Or see this region's nucleotide sequence